Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7566 168 1e-36 seq4766 161 2e-34 seq3410 141 2e-28 seq1878 122 2e-22 seq2624 120 6e-22 seq1472 104 4e-17 >seq7566 Length=2327 Score = 168 bits (186), Expect = 1e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || |||||||| || Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACC 1284 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||| ||||| |||||||| || Sbjct 1283 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 1234 >seq4766 Length=3560 Score = 161 bits (178), Expect = 2e-34 Identities = 668/1033 (65%), Gaps = 32/1033 (3%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||||||| ||||||||||||| || || ||| ||| || Sbjct 1885 CGCCACTGGATGTACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAGGCG 1826 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 1825 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGCGTGGGG 1766 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||||||||| ||||||||||| | |||||| ||||| ||||||||||| Sbjct 1765 ATGAG-CTCACCGGTGAGGACGTTGATGAGCGTCGACTTGCCGGCACCGTTGGGGCCAAT 1707 Query 225160 CACGCCAATCCGGGA--TGACATTGCAACCTG---CGAGTTCACGTTG--CTGAAGATCT 225212 ||| |||| ||||| || | ||| ||| |||| | | | | ||| | | Sbjct 1706 GACGGCAATACGGGAGCCGAGAGAGCA--CTGGAACGAGATGTCCTGGATCTGGGGCTTG 1649 Query 225213 CAGG-GCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGC-TTCATGATGGCACGGTCCTT 225270 | || ||| | |||| || | || || | || || |||||| | |||| Sbjct 1648 CTGGTGCCGG---GGTACTGGAACGTCA-TCCTGGTGGCACGCAGGATGGCCTTGGCCTT 1593 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330 || | | |||||| ||||| |||||||||||||| ||| || | | ||| | Sbjct 1592 GGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGTCGCT 1533 Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAG 225390 || |||||||| || || |||| ||| ||||| | |||||| || | Sbjct 1532 GAGCTCGTAGTACGACTTGGCGGCGGGGTTCTTCTTGACGAACTCCTTCAGGTTACCACG 1473 Query 225391 GTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCAA 225449 || | ||||||||| | |||||| || || || ||| | ||| || ||| | Sbjct 1472 GTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACGATGTGCTG-GCAGACGTTGTCGA 1417 Query 225450 GGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||||| || |||||||| | || | | | | || ||||| | Sbjct 1416 GGAAGGCAGAGTCGTGGGAGACGATGATGGAGGTGCAGG---GGGA-GTTCTGGAGGTAC 1361 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 |||||| ||||| | ||||||| |||||| || || ||||| ||||||||| Sbjct 1360 TCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAAGCAGG 1301 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 || || | | || || ||| || || | |||||||| ||||| || || || Sbjct 1300 ATATCGGGGGCCTCGAAGACGGCACGGCACAGGGCGAGCTTCATCTTCCAACCACCAGAG 1241 Query 225629 AGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC---CAGGAGCGTC 225685 |||| | ||| | | | | ||| |||||| |||| ||| | | Sbjct 1240 AGGGCGGAGATCTCGCCCTTGACCATGTTCTCGGTGAAGCCGAACTCGTTCAGCTTGGCC 1181 Query 225686 TGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATC 225744 | || | || ||||| || | | |||| | | | | | | | || Sbjct 1180 TCGA-CGTCGGCCTGGGAGGTCTCGACACCGGCGTCCTGAAGCTTCTTCATGGTCCACTC 1122 Query 225745 ATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAG 225804 | ||||| || | | | | | ||| | |||||| || ||| | || ||| || Sbjct 1121 AATGGTAGTCATCTCAGTGTCGGCAGAGTCGAGGTCGTGCTCGACGAAGACGGTCTTGAC 1062 Query 225805 CTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACT 225864 || || | |||||||||||| | ||| | || || || || | ||||| Sbjct 1061 CTCGGACTGCTTGGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGA 1002 Query 225865 CTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCG 225924 |||||| | |||||||| ||| || ||||| | | || ||||||| |||| | Sbjct 1001 CTTGCCGGAACCGTTGGGGCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGAGGTG 942 Query 225925 CGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 || ||| || ||||||||| |||| ||||| |||||||| ||| | ||| ||||| Sbjct 941 GGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGTTGCAGAGGTC 882 Query 225985 CTCACCCTCCTCG 225997 ||||||||||||| Sbjct 881 CTCACCCTCCTCG 869 >seq3410 Length=4507 Score = 141 bits (156), Expect = 2e-28 Identities = 324/479 (68%), Gaps = 18/479 (4%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 1703 TTCATGACACCGGCCTTCTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 1762 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 | ||||| ||| |||||||||||| ||||||| | | | | | || |||| Sbjct 1763 CCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGT--TGGAAGACTTGTAGAC--CTTGTC 1818 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 || || || || | || |||||| || |||||||| |||||||| |||||| || Sbjct 1819 GTTGCCAAGAGCAACCAGAAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTT 1878 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||||| || | || || | ||| || | ||| |||| ||| | Sbjct 1879 GGAGTTCATGCCAAGCAGGGCACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTT 1938 Query 10169 GACCGCTTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCT 10224 |||||| || ||| |||| ||| | ||| | | ||| | ||||| ||| | Sbjct 1939 GACCGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGAT 1994 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 || ||||| || | || | |||||| ||||| || || ||||| ||||| Sbjct 1995 GGGAGTACAGCAGGCAGGCGAAGTCGGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGT 2054 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAAC 10343 |||| || ||| ||||||||||| || || || |||||||| |||| ||| ||| Sbjct 2055 TGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGC-GAAG 2113 Query 10344 GACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402 | ||| ||| | | |||||| ||| | | ||||| || |||| ||||| || Sbjct 2114 GCACCGCTGAAGAAGATACCCTCAACGGCGGCGAAAGCGACCAGACGCTGGGCGAATGA 2172 >seq1878 Length=6026 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| ||||| ||||| || |||||||| || || Sbjct 5706 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 5765 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | ||||| || ||||| || | | || |||||||| || Sbjct 5766 AGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGG 5825 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | ||| ||| ||||| ||||| | || || || Sbjct 5826 ATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACC 5885 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || | |||||||||||| |||||||| Sbjct 5886 TCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932 >seq2624 Length=14322 Score = 120 bits (132), Expect = 6e-22 Identities = 216/314 (69%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || |||||||| ||||| |||||||||||| || || || |||| | || || | | Sbjct 9709 CCTGTGTGGACATCCTCAGAGAAGCCAATCTCGGCCGTTCCACCGACATCAACGAGAGAC 9768 Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAGAA 59416 || || ||||| | ||| | |||||||| | || | || | ||| ||| Sbjct 9769 TCGCGTCGGTACAGGGCGTTGCTTCCGACGCAGATGGACGCTCCCCATCTGTTGCGGTTG 9828 Query 59417 ACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGTC 59476 ||||||| | ||||||||||| ||||| || || || | |||||||||| ||| Sbjct 9829 ACCTGGACAACGCGGTAGAACAGCTCCTGCGTGGCACCCGCGCCCTGCTCAACCCACGTC 9888 Query 59477 TGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCA--T 59534 |||||| | || |||| |||||||| |||| || | || |||| ||||| Sbjct 9889 TGGTCGTCGGTGACGCGGAAGTACTGGGGGCTCTGGACGAGGGCCGTCTTCTCGTCACCC 9948 Query 59535 GGGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGA 59594 || || ||| | ||||||||| |||| || ||||| || ||||| || |||| Sbjct 9949 AGGTGCTCTA--CCATCAGCTCCTTGAGGAAGTCGGGTCGCGGGCAAAAGTCGGCGTCGA 10006 Query 59595 AGATGGCAAAGAAG 59608 |||| ||||||||| Sbjct 10007 AGATAGCAAAGAAG 10020 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/143 (75%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 275303 GGTTTCAATATCTCG-TGCGCGACAACCGGCC--GCATATGAAGAAGGCCGGCAACCTCC 275359 || ||||| |||| | |||||| |||| || || | ||| ||||||||||||| Sbjct 10106 GGCTTCAACTACTCGGTCCGCGACGACCGCCCTCGCCTCCGAA--AGGCCGGCAACCTGA 10049 Query 275360 GGTCCGCCTTTACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGACTTCTGCC 275419 | | | ||| || |||| |||| || ||||||| ||||| ||||||||||| |||| Sbjct 10048 GATGGACTTTTGCCCAGACCAACGGAGACTTCTTTGCTATCTTCGACGCCGACTTTTGCC 9989 Query 275420 CAAGGCCCGACTTCCTCGAGGAG 275442 | | |||||||||||| ||||| Sbjct 9988 CGCGACCCGACTTCCTCAAGGAG 9966 >seq1472 Length=6678 Score = 104 bits (114), Expect = 4e-17 Identities = 428/672 (64%), Gaps = 11/672 (2%) Strand=Plus/Plus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||| || |||||||| | ||||||||||| ||| | || || || |||| | || | Sbjct 2380 GGCGTAACGCCACTGCAGATACTGGTTGGGCGTCTTCTCGAGATGCATCTCGACGTGCTC 2439 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 || ||| ||||| | |||| | || |||| |||||| |||||| || ||| Sbjct 2440 GAGAGCGTGCTGCTTGATGTACCCGATACGCAGGTTGGGGTGCTTCTCTACCTTGCCGGT 2499 Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 || || | ||||||| ||||| | ||||||||| |||| |||||| ||||| || || Sbjct 2500 GGTGGGAATTACCTCGCCAGTGAGAATCTTGATGAGGGTAGACTTGCCAGCACCGTTAGG 2559 Query 225154 GCCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCT----GAAGA 225209 || || | | | | | ||| |||| | || ||| | | || | ||| |||| Sbjct 2560 ACCGATGATGGCCACTCTGGACGACAGAGTAAGCTGGCAAGTGACTTCGCTCAGGGAAGG 2619 Query 225210 TCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCT 225269 | ||||| | |||| | ||| ||||| || |||||||| ||| | Sbjct 2620 CTTGGGGGCCT-TGGGGTACTGATAGGAGACGCCGGTCATGCGGATGATGGCGCGGGTCA 2678 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329 ||| | | ||| || || ||||| ||||||| ||| | | | | | Sbjct 2679 GGGACTTGACACCGGTCAAGATACCGGGGGGCGGGAACTTGAACTGGACCTGGGAGGCAG 2738 Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCG---CTTTGCCACGAAAGCAGACAGGTTTC 225386 || |||||| || ||||| || ||| ||||| | |||||| | Sbjct 2739 AGAGCGTGTAGTAGCTCTTGGCTTCGGGGCGGAGCTTA---ACGAAGTTGGCCAGGTTGC 2795 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGT 225446 | || || ||||| ||| |||||| || || | | | || || Sbjct 2796 CCTTGTAGCACGCCAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGTTGT 2855 Query 225447 CAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGT 225506 | ||||| || ||||||||||| || || | | | || | || |||||||| Sbjct 2856 CGAGGAAACCGGAGTCGTGGGAAACGATCAAACTGGTGATGTCGGGGTGGGTCTTGAGGT 2915 Query 225507 GCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566 || |||||| || | |||| ||||||| |||||| ||||||||||| || |||| Sbjct 2916 AGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCA 2975 Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626 ||| ||| || | |||| ||||| || | | | || |||||| ||||| || |||| Sbjct 2976 GGACGTCGGCGCCCTTGAGCATGGCACGAGCCAACGCCAACTTCATCTTCCATCCACCGG 3035 Query 225627 ACAGGGAGCCGA 225638 |||| ||||||| Sbjct 3036 ACAGAGAGCCGA 3047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921504489934200