Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2519 461 1e-124 seq3410 235 1e-56 >seq2519 Length=5298 Score = 461 bits (510), Expect = 1e-124 Identities = 930/1365 (68%), Gaps = 55/1365 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||||||||||| ||| | || || Sbjct 3286 GTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGG 3227 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | | ||| ||||||||| ||||||| ||||| |||||||||||||||| || Sbjct 3226 CTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGAC 3167 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTC 244266 |||||| ||| | || |||||| || ||| ||| ||| ||| |||| Sbjct 3166 GAGCAGAGAGTTGCGGACACCGTGCTGCTTGAT-------CTG--CTCCTTCAGAGAGTC 3116 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||| | || |||||||| | |||| |||||||||| |||| || | |||| Sbjct 3115 CCA---GTCCCAGAGGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCCCTG 3059 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGC 244385 | ||| || ||||||||| ||| |||| || || || | ||||||| |||| Sbjct 3058 GGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGA 2999 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 | || |||||| |||| ||||||||||||||||||| ||||||| | ||||||||| | Sbjct 2998 CATGGT-GAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTT 2940 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | | |||||| |||| | || ||| | ||||| || |||||||| |||| Sbjct 2939 CGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGA 2880 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTT---GGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 ||| ||||| | ||| ||| |||| | ||| || || | ||||||||| || Sbjct 2879 GGCCAATGGGGCGGTGGCGCATGTTACTGTTGCGA---GCCTCTTGAACGGGGTAATGGT 2823 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || ||||||| | |||| |||||||| | | || || ||| ||| || Sbjct 2822 TGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCT 2763 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 | |||||||| | | ||||| | | || | ||||| | || |||| Sbjct 2762 GGAAGTCGTAGAC------ACCCTCGTTG-TAGTCA-----ACAAAAGTGGGAAGTGCGA 2715 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 ||||||||||||||| || ||||| || | | ||||| | ||||| |||| Sbjct 2714 GCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGC 2655 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | |||||| || ||||| || |||| || || ||| |||| |||| ||| | Sbjct 2654 ACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCAT 2595 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||||||||||||||| || |||||| |||||| | |||| | ||||| Sbjct 2594 CCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGA 2535 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGG 244921 | | | |||||| | ||| |||| |||||||| |||| ||||| |||| | Sbjct 2534 GCTTCTGAGCCTTCATGGTCTTGCGTCCCTTGCCCATCTG-TTCGTACTTCTCATACAAG 2476 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 ||||| ||||| ||| || ||| | | ||| |||||| |||||||| ||| Sbjct 2475 GCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGA 2416 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||| || ||| | || ||| |||| ||||||||| ||||| ||||||||||| | Sbjct 2415 GTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGA 2356 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTC 245100 |||||||| | | | ||| ||| || ||| ||||| | ||| ||||| ||||| Sbjct 2355 AAGAGGTCACGAGCGCGGACCTCCTCCTTTCC-GTGATTCTTGCGCAGATCCAAGAAGTC 2297 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 ||||||||| ||||||| ||||| | ||||| || | ||| ||||| |||||||| || Sbjct 2296 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACC 2237 Query 245161 TCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 ||||||| || | | ||||| |||||||| || || |||| || | || Sbjct 2236 ACCCTGGT----CAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGC 2181 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 | || ||| || |||||||| ||||||| ||| || | | | ||| | || Sbjct 2180 CATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCAC---GAATGC-GGTGA 2125 Query 245277 ACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 |||| ||| | || ||||| ||||||||| | |||||| |||||| |||||| Sbjct 2124 ACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCA 2065 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 || ||||| ||| || |||||||| || || ||||||||||| ||||||| | Sbjct 2064 TAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCC 2005 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | ||| | | | |||||| || ||||| |||||| || ||| Sbjct 2004 TGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAG 1960 >seq3410 Length=4507 Score = 235 bits (260), Expect = 1e-56 Identities = 369/516 (72%), Gaps = 33/516 (6%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGAT---CGA-GAGTCCCGACGCAACGTTCGGCGA 42700 || ||||| |||||||| ||||| ||||| ||| ||| | | | |||| | | Sbjct 2217 AAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGA----AATCTTCATTCGCCCA 2162 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | ||||| || || ||||||| ||||| ||||||||| || |||||||| ||||| Sbjct 2161 GCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCGTCCAT 2102 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||||| || ||| || |||||||| || |||||||| ||||| |||||| Sbjct 2101 CTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGCCTGACCTTCTCCAACGAGCTCATCT 2043 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | || ||||| || || | ||||| |||||||| |||| ||| ||| |||| | Sbjct 2042 CTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTC---CCATCTCAAGA 1986 Query 42880 ACAAGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGA 42936 || |||| | | ||| |||| || ||||||| || || || |||||||| Sbjct 1985 AC-CGCCCCAGCA--AGCAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGATCGAGC 1929 Query 42937 AGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995 |||||||||| || | | |||| ||| ||||| | ||||||||| | || | ||| Sbjct 1928 AGGAGTTCCTGACTGAAGCCTTGCCTTGTG-CCCTGCTTGGCATGAACTCCAACTTGATG 1870 Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC 43053 ||||||| ||| ||||||||||| || || | | | ||| || || | Sbjct 1869 AAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCT------GGTTGCTCTTGGCAACGAC 1816 Query 43054 ----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109 ||||||| | | |||||||||||| |||||||||||||| ||| |||||| Sbjct 1815 AAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAG 1756 Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| || |||||||| || || ||||||||| Sbjct 1755 ACCAACTTCTTTGAGAAGCGTGTTGCTGACTACCAG 1720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944218383603600