Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 461 1e-124
seq3410 235 1e-56
>seq2519
Length=5298
Score = 461 bits (510), Expect = 1e-124
Identities = 930/1365 (68%), Gaps = 55/1365 (4%)
Strand=Plus/Minus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | || || ||||||||||||| ||| | || ||
Sbjct 3286 GTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGG 3227
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||| | | ||| ||||||||| ||||||| ||||| |||||||||||||||| ||
Sbjct 3226 CTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGAC 3167
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTC 244266
|||||| ||| | || |||||| || ||| ||| ||| ||| ||||
Sbjct 3166 GAGCAGAGAGTTGCGGACACCGTGCTGCTTGAT-------CTG--CTCCTTCAGAGAGTC 3116
Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326
||| | || |||||||| | |||| |||||||||| |||| || | ||||
Sbjct 3115 CCA---GTCCCAGAGGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCCCTG 3059
Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGC 244385
| ||| || ||||||||| ||| |||| || || || | ||||||| ||||
Sbjct 3058 GGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGA 2999
Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445
| || |||||| |||| ||||||||||||||||||| ||||||| | ||||||||| |
Sbjct 2998 CATGGT-GAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTT 2940
Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505
| | |||||| |||| | || ||| | ||||| || |||||||| ||||
Sbjct 2939 CGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGA 2880
Query 244506 TGCCGATGGGTCTGTGTCGCTTGTT---GGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562
||| ||||| | ||| ||| |||| | ||| || || | ||||||||| ||
Sbjct 2879 GGCCAATGGGGCGGTGGCGCATGTTACTGTTGCGA---GCCTCTTGAACGGGGTAATGGT 2823
Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622
|| ||||||| | |||| |||||||| | | || || ||| ||| ||
Sbjct 2822 TGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCT 2763
Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682
| |||||||| | | ||||| | | || | ||||| | || ||||
Sbjct 2762 GGAAGTCGTAGAC------ACCCTCGTTG-TAGTCA-----ACAAAAGTGGGAAGTGCGA 2715
Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742
||||||||||||||| || ||||| || | | ||||| | ||||| ||||
Sbjct 2714 GCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGC 2655
Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802
| |||||| || ||||| || |||| || || ||| |||| |||| ||| |
Sbjct 2654 ACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCAT 2595
Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862
||||||||||||||||||| || |||||| |||||| | |||| | |||||
Sbjct 2594 CCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGA 2535
Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGG 244921
| | | |||||| | ||| |||| |||||||| |||| ||||| |||| |
Sbjct 2534 GCTTCTGAGCCTTCATGGTCTTGCGTCCCTTGCCCATCTG-TTCGTACTTCTCATACAAG 2476
Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981
||||| ||||| ||| || ||| | | ||| |||||| |||||||| |||
Sbjct 2475 GCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGA 2416
Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041
|||| || ||| | || ||| |||| ||||||||| ||||| ||||||||||| |
Sbjct 2415 GTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGA 2356
Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTC 245100
|||||||| | | | ||| ||| || ||| ||||| | ||| ||||| |||||
Sbjct 2355 AAGAGGTCACGAGCGCGGACCTCCTCCTTTCC-GTGATTCTTGCGCAGATCCAAGAAGTC 2297
Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160
||||||||| ||||||| ||||| | ||||| || | ||| ||||| |||||||| ||
Sbjct 2296 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACC 2237
Query 245161 TCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216
||||||| || | | ||||| |||||||| || || |||| || | ||
Sbjct 2236 ACCCTGGT----CAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGC 2181
Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276
| || ||| || |||||||| ||||||| ||| || | | | ||| | ||
Sbjct 2180 CATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCAC---GAATGC-GGTGA 2125
Query 245277 ACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332
|||| ||| | || ||||| ||||||||| | |||||| |||||| ||||||
Sbjct 2124 ACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCA 2065
Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392
|| ||||| ||| || |||||||| || || ||||||||||| ||||||| |
Sbjct 2064 TAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCC 2005
Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
| ||| | | | |||||| || ||||| |||||| || |||
Sbjct 2004 TGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAG 1960
>seq3410
Length=4507
Score = 235 bits (260), Expect = 1e-56
Identities = 369/516 (72%), Gaps = 33/516 (6%)
Strand=Plus/Minus
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGAT---CGA-GAGTCCCGACGCAACGTTCGGCGA 42700
|| ||||| |||||||| ||||| ||||| ||| ||| | | | |||| | |
Sbjct 2217 AAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGA----AATCTTCATTCGCCCA 2162
Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760
| | ||||| || || ||||||| ||||| ||||||||| || |||||||| |||||
Sbjct 2161 GCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCGTCCAT 2102
Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819
||||||||||||| || ||| || |||||||| || |||||||| ||||| ||||||
Sbjct 2101 CTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGCCTGACCTTCTCCAACGAGCTCATCT 2043
Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879
| || ||||| || || | ||||| |||||||| |||| ||| ||| |||| |
Sbjct 2042 CTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTC---CCATCTCAAGA 1986
Query 42880 ACAAGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGA 42936
|| |||| | | ||| |||| || ||||||| || || || ||||||||
Sbjct 1985 AC-CGCCCCAGCA--AGCAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGATCGAGC 1929
Query 42937 AGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995
|||||||||| || | | |||| ||| ||||| | ||||||||| | || | |||
Sbjct 1928 AGGAGTTCCTGACTGAAGCCTTGCCTTGTG-CCCTGCTTGGCATGAACTCCAACTTGATG 1870
Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC 43053
||||||| ||| ||||||||||| || || | | | ||| || || |
Sbjct 1869 AAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCT------GGTTGCTCTTGGCAACGAC 1816
Query 43054 ----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109
||||||| | | |||||||||||| |||||||||||||| ||| ||||||
Sbjct 1815 AAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAG 1756
Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||| || |||||||| || || |||||||||
Sbjct 1755 ACCAACTTCTTTGAGAAGCGTGTTGCTGACTACCAG 1720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944218383603600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |