Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3410 95.1 3e-14 >seq3410 Length=4507 Score = 95.1 bits (104), Expect = 3e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 243566 TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCA 243625 ||||||||||||| | | ||| |||||||| || ||||| ||||||||| || | Sbjct 1892 TTGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTGG 1833 Query 243626 TCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCA 243685 | || ||||| | || || || ||||| || |||||||| | ||| |||||| || Sbjct 1832 TTGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACA 1773 Query 243686 TTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCT 243744 | || || || || || |||||||| || |||||||| ||| || || | | || Sbjct 1772 TCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCTGACTACCAGAAGGCC- 1714 Query 243745 GGTGTGATGAA 243755 ||||| ||||| Sbjct 1713 GGTGTCATGAA 1703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102735372797250