Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2519 215 6e-51 seq3410 98.7 1e-15 >seq2519 Length=5298 Score = 215 bits (238), Expect = 6e-51 Identities = 943/1476 (64%), Gaps = 31/1476 (2%) Strand=Plus/Minus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974 ||||| || || ||| || | | | ||||| || | ||||| |||||||| ||||| Sbjct 3273 AACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCG 3214 Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 114034 ||||| |||||||| || | ||| ||| || |||||||| || | ||| || ||| Sbjct 3213 TTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTG 3154 Query 114035 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 114094 |||| ||| | | | | || | ||||| || | ||||||||| || | | | | Sbjct 3153 CGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGC 3094 Query 114095 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTC 114154 | | | |||||| ||| |||| ||||| || |||||| | ||||| ||||| | ||| Sbjct 3093 TTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTC 3034 Query 114155 TCGTATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 114211 | |||||||||||| | | |||| | | || | | |||||| ||||| || Sbjct 3033 TGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGACATGG---TGAGGGCAGCGTGGTAG 2977 Query 114212 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 114271 || ||||| || || || | | ||| ||| || || || | | || Sbjct 2976 ATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGA 2917 Query 114272 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 114331 | || |||| || ||||| || |||||||||||||| ||||| || | ||| Sbjct 2916 AGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATG 2857 Query 114332 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 114391 ||| || ||||| | ||||| ||| || ||||| | || || || || Sbjct 2856 TTACTGTTGCGAGCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTG 2797 Query 114392 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 114451 ||||||| || | || || ||||| | | | || | | | ||| | Sbjct 2796 CGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTG 2740 Query 114452 TTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 114508 | | ||| | | ||||| |||| || ||||| || || |||| | ||| || | Sbjct 2739 TAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGA 2680 Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 114568 | |||||| || || || || |||| || || || |||||| || | |||||| Sbjct 2679 GCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTC 2620 Query 114569 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 114628 || || ||| ||| ||||||||||| |||||| | || | || ||||| || Sbjct 2619 TGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTC 2560 Query 114629 TGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGC 114685 |||| || || ||||| | ||||| | || | | || || | | ||| | || || Sbjct 2559 TGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCT-TCATGGTCTTGCG-TCCCTTGC 2502 Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 || | || |||||||| || | ||| |||||||| || || | || | | Sbjct 2501 CCAT-CTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAG 2443 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || || || || ||||| | |||| ||| | || || ||| || | ||||||| Sbjct 2442 CCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATG 2383 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 ||||| || || |||||||| || ||||| || ||| ||| | || || | || Sbjct 2382 AAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCG 2323 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925 ||||| |||| ||||| ||||| | || || |||||||| || || ||||| | Sbjct 2322 TGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATG 2263 Query 114926 GCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAAT 114982 || | | || ||| |||| |||||| || || | || ||| || || Sbjct 2262 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAG 2203 Query 114983 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACT 115040 || |||||||| || | | |||| || ||||| || || || || ||| | Sbjct 2202 ACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCC- 2144 Query 115041 TATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 115100 | |||| | | || | | || || ||||| || ||| ||| ||||| | Sbjct 2143 -AGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGG 2085 Query 115101 CGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGA 115160 |||| | |||| || | ||||| || ||||| || || |||| | ||| |||| Sbjct 2084 CGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGA 2025 Query 115161 AGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219 ||||| || | || ||||| ||| ||||||||||||||||| || || | ||||| Sbjct 2024 AGCAGGAGGATAGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGC 1966 Query 115220 ATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 115277 ||| | | |||| ||||||| | |||||| || | |||| || ||| || | Sbjct 1965 GTGA--AGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCAC 1908 Query 115278 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 115337 | || || | | ||| ||||| | ||||| ||| || | || | | || | Sbjct 1907 CCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGT 1848 Query 115338 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373 | ||| | ||||||| |||||||||| |||| Sbjct 1847 CAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGA 1812 >seq3410 Length=4507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| ||||| ||||| |||||||| || || |||||| ||| || ||||||||||| Sbjct 2023 GTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2082 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 2083 ACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2142 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT----GTCAAACCACTTCA 126233 ||||| || | ||||||| || || || || ||| | || || |||||| | Sbjct 2143 GGCGAAAGCGACCAGACGCTGGGCGAATGA---AGA-TTTCTCATCGTTAATCCACTTGA 2198 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTC 126271 ||||| | |||||||| ||||| || || ||| Sbjct 2199 GAGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGTC 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597277176073800