Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1878 95.1 1e-14 seq7566 84.2 2e-11 seq1773 84.2 2e-11 >seq1878 Length=6026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | || || || |||| |||||| || || || |||||||| || Sbjct 5706 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 5765 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| ||||| |||||||| || | || | ||||||||||||||||| Sbjct 5766 AGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGG 5825 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || | ||||| Sbjct 5826 ATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACC 5885 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| |||||||| || || ||||| || ||||| Sbjct 5886 TCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932 >seq7566 Length=2327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || || || || || |||||||| || | Sbjct 1464 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1405 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| || ||||||||||| || | || | |||||||||||||| || Sbjct 1404 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGG 1345 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | ||||| Sbjct 1344 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCAC 1285 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || ||||| || ||||| Sbjct 1284 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237 >seq1773 Length=6176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || | | |||||| |||| || |||||||||||||| | || Sbjct 5339 TTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGATC 5280 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | |||||||||||||| || || || || || || || || || ||| ||| || Sbjct 5279 AAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 5220 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | |||||| || |||| || || |||||| Sbjct 5219 ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 5160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499580876693400