Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2519 354 8e-93 >seq2519 Length=5298 Score = 354 bits (392), Expect = 8e-93 Identities = 1092/1674 (65%), Gaps = 44/1674 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | ||||||||| |||||| || |||||||||||| | || ||| Sbjct 1793 AACTACCAGTACTTCGGCTTCAAAACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGC 1852 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | | | ||| | ||||| || || | ||||| |||||| | || || || || Sbjct 1853 AAGATCGCTGAGAGGCCGCAACACATGATCATGCGTGTCGCCGTTGGCATCTGGGGTGAC 1912 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG--- 93891 ||| | | || | | | || || || | || | || || | Sbjct 1913 GACGTTGAGCGCGTCATCGAAACCTACA---ACTTGATGTCCAGCAAGTTCTTCACGCAC 1969 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || || |||||||| || ||||| | | ||| | || || || ||||| Sbjct 1970 GCCTCTCCCACACTCTTCAACGCTGGTACCCCACAGGCCCAGCTATCCTCCTGCTTCCTC 2029 Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | ||| | |||| || |||||| || || | |||| ||||||| || || | Sbjct 2030 GTCGAC-ATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAGACTTGCGCCAT 2088 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 ||||| || || || || ||||| | | ||| ||| | | ||||||| || || Sbjct 2089 GATCTCCAAGATGGCCGGTGGTATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTC 2148 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 |||||| ||| |||||||| |||||||| ||| | ||||||||||| || |||||||| Sbjct 2149 CTACATTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAA 2208 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| |||| |||||||| |||||||||||| | | | ||| | || || |||| Sbjct 2209 CAACACGGCTCGCTACGTTGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTA 2268 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || ||||| |||||||| ||||| | ||| | || ||||| ||||| ||||| || Sbjct 2269 CCTTGAGCCTTGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAA 2328 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || || | || | |||||||| || |||||| | || || || || ||||| Sbjct 2329 GGAGGAGGTCCGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAA 2388 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 | |||||||| ||| | ||||| |||| | || |||||||| || || || || | Sbjct 2389 GAGAGTCGAGAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGC 2448 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 |||| | || | ||||| | |||||||| |||||| | |||||||| Sbjct 2449 CGACTGCTACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAACAGATGGGCAAGGG 2508 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | ||| ||| | ||| |||||| ||| || ||| | || | ||| ||||| Sbjct 2509 ACGCAAGACCATGAAGGCTCAGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGAC 2568 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 || | |||| ||| | | |||||| | | |||| |||| ||||||| || |||| Sbjct 2569 TGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCT 2628 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || || ||||| || |||||||| ||||| | ||||| |||| ||||| Sbjct 2629 TGGTACCATTCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGACGA 2688 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | | ||||| || ||||||| ||| || || ||||||| || || ||||| Sbjct 2689 GGTCGCTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGT------TGACTACA- 2741 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGG-GA---AGGATGGTCT 94726 | | | || | ||| | || |||| | || || || ||| || | | Sbjct 2742 -ACGAGGGTGTC-TACGACTTCCAGAAGCT------CCACGAGGTGACCCAGGTTGTTGT 2793 Query 94727 T--GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 | ||||||||||| | |||||| ||| |||||||| | ||||| ||| Sbjct 2794 TCGCAACCTGAACAGAATCATCGACGTCAACCATTACCCCGTTCAAGAGGCTCGCAACAG 2853 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 ||| || || || ||||| ||| |||| || |||||| | || || || | || Sbjct 2854 TAACATGCGCCACCGCCCCATTGGCCTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTGGC 2913 Query 94845 GATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAG 94904 | || |||||| ||| ||| ||| || | | || ||| || ||||| | Sbjct 2914 TCTTCGCATGCCCTTCGAGTCTCCCGAAGCCCGCGACCTCAACAAGAAGATCTTCGAGAC 2973 Query 94905 CATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACA 94964 ||| || ||| ||| | | || || || |||| | | ||| ||| ||| | Sbjct 2974 CATCTACCACGCTGCCCTCACCATGTCTGTGCAGCTGGCTAAAGAGGAGGGC---CCATA 3030 Query 94965 CGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 | | ||| | || ||||| | |||||||| |||||| ||| | ||| ||| Sbjct 3031 CCAGACGTACGAGGGCTCGCCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGGAATGT 3090 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGT 95082 ||||| |||| || | |||||||| |||| | | || || | | | |||||| Sbjct 3091 CAAGCCTTCGGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGA--TCAAGCAGCACGGT 3148 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 || ||| | ||||| || || |||||||| || ||| ||| |||||||| | ||| Sbjct 3149 GTCCGCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGC 3208 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 |||||||||| || || |||| |||||| ||| | ||| | | || || || || || Sbjct 3209 AACAACGAGTGTTTTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGC 3268 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGG-- 95259 || |||| ||| ||||| || || ||||| || || | |||| | ||| Sbjct 3269 GAGTTCCAGGTCGTCAACCCTTGGCTTCTTAAGGACCTTGTCGAC-ATGGGCCTATGGTC 3327 Query 95260 -GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA 95318 | || || | ||||||| | | || ||||| || | |||||||| || | Sbjct 3328 CGATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCAATTCAGAACATTCCCAA 3384 Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || || ||||||| || ||||||||||| ||||| ||| | ||||| Sbjct 3385 CATCCCCACAGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCG 3438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494659906350600