Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 354 8e-93
>seq2519
Length=5298
Score = 354 bits (392), Expect = 8e-93
Identities = 1092/1674 (65%), Gaps = 44/1674 (3%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | ||||||||| |||||| || |||||||||||| | || |||
Sbjct 1793 AACTACCAGTACTTCGGCTTCAAAACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGC 1852
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | | | ||| | ||||| || || | ||||| |||||| | || || || ||
Sbjct 1853 AAGATCGCTGAGAGGCCGCAACACATGATCATGCGTGTCGCCGTTGGCATCTGGGGTGAC 1912
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG--- 93891
||| | | || | | | || || || | || | || || |
Sbjct 1913 GACGTTGAGCGCGTCATCGAAACCTACA---ACTTGATGTCCAGCAAGTTCTTCACGCAC 1969
Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951
||| | || || || |||||||| || ||||| | | ||| | || || || |||||
Sbjct 1970 GCCTCTCCCACACTCTTCAACGCTGGTACCCCACAGGCCCAGCTATCCTCCTGCTTCCTC 2029
Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010
| ||| | |||| || |||||| || || | |||| ||||||| || || |
Sbjct 2030 GTCGAC-ATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAGACTTGCGCCAT 2088
Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070
||||| || || || || ||||| | | ||| ||| | | ||||||| || ||
Sbjct 2089 GATCTCCAAGATGGCCGGTGGTATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTC 2148
Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130
|||||| ||| |||||||| |||||||| ||| | ||||||||||| || ||||||||
Sbjct 2149 CTACATTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAA 2208
Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190
|||| |||| |||||||| |||||||||||| | | | ||| | || || ||||
Sbjct 2209 CAACACGGCTCGCTACGTTGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTA 2268
Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250
|| ||||| |||||||| ||||| | ||| | || ||||| ||||| ||||| ||
Sbjct 2269 CCTTGAGCCTTGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAA 2328
Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310
|| || | || | |||||||| || |||||| | || || || || |||||
Sbjct 2329 GGAGGAGGTCCGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAA 2388
Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370
| |||||||| ||| | ||||| |||| | || |||||||| || || || || |
Sbjct 2389 GAGAGTCGAGAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGC 2448
Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430
|||| | || | ||||| | |||||||| |||||| | ||||||||
Sbjct 2449 CGACTGCTACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAACAGATGGGCAAGGG 2508
Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490
| ||| ||| | ||| |||||| ||| || ||| | || | ||| |||||
Sbjct 2509 ACGCAAGACCATGAAGGCTCAGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGAC 2568
Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550
|| | |||| ||| | | |||||| | | |||| |||| ||||||| || ||||
Sbjct 2569 TGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCT 2628
Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610
|| || ||||| || |||||||| ||||| | ||||| |||| |||||
Sbjct 2629 TGGTACCATTCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGACGA 2688
Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670
| | ||||| || ||||||| ||| || || ||||||| || || |||||
Sbjct 2689 GGTCGCTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGT------TGACTACA- 2741
Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGG-GA---AGGATGGTCT 94726
| | | || | ||| | || |||| | || || || ||| || | |
Sbjct 2742 -ACGAGGGTGTC-TACGACTTCCAGAAGCT------CCACGAGGTGACCCAGGTTGTTGT 2793
Query 94727 T--GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784
| ||||||||||| | |||||| ||| |||||||| | ||||| |||
Sbjct 2794 TCGCAACCTGAACAGAATCATCGACGTCAACCATTACCCCGTTCAAGAGGCTCGCAACAG 2853
Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844
||| || || || ||||| ||| |||| || |||||| | || || || | ||
Sbjct 2854 TAACATGCGCCACCGCCCCATTGGCCTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTGGC 2913
Query 94845 GATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAG 94904
| || |||||| ||| ||| ||| || | | || ||| || ||||| |
Sbjct 2914 TCTTCGCATGCCCTTCGAGTCTCCCGAAGCCCGCGACCTCAACAAGAAGATCTTCGAGAC 2973
Query 94905 CATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACA 94964
||| || ||| ||| | | || || || |||| | | ||| ||| ||| |
Sbjct 2974 CATCTACCACGCTGCCCTCACCATGTCTGTGCAGCTGGCTAAAGAGGAGGGC---CCATA 3030
Query 94965 CGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024
| | ||| | || ||||| | |||||||| |||||| ||| | ||| |||
Sbjct 3031 CCAGACGTACGAGGGCTCGCCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGGAATGT 3090
Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGT 95082
||||| |||| || | |||||||| |||| | | || || | | | ||||||
Sbjct 3091 CAAGCCTTCGGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGA--TCAAGCAGCACGGT 3148
Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142
|| ||| | ||||| || || |||||||| || ||| ||| |||||||| | |||
Sbjct 3149 GTCCGCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGC 3208
Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202
|||||||||| || || |||| |||||| ||| | ||| | | || || || || ||
Sbjct 3209 AACAACGAGTGTTTTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGC 3268
Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGG-- 95259
|| |||| ||| ||||| || || ||||| || || | |||| | |||
Sbjct 3269 GAGTTCCAGGTCGTCAACCCTTGGCTTCTTAAGGACCTTGTCGAC-ATGGGCCTATGGTC 3327
Query 95260 -GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA 95318
| || || | ||||||| | | || ||||| || | |||||||| || |
Sbjct 3328 CGATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCAATTCAGAACATTCCCAA 3384
Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
|| || || ||||||| || ||||||||||| ||||| ||| | |||||
Sbjct 3385 CATCCCCACAGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCG 3438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494659906350600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |