Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 105 6e-18
seq3410 95.1 1e-14
seq1773 89.7 5e-13
>seq7566
Length=2327
Score = 105 bits (116), Expect = 6e-18
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||| || | || ||||| || || || ||||| |||
Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || || ||| ||||||| |||||||| ||||| ||
Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACC 1284
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || || || || || || || || |||||||||
Sbjct 1283 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 1236
>seq3410
Length=4507
Score = 95.1 bits (104), Expect = 1e-14
Identities = 329/508 (65%), Gaps = 19/508 (4%)
Strand=Plus/Minus
Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAA--CGTCA 47127
||||| | || | ||||||||| ||||| | |||| ||| | | || || | |||
Sbjct 2229 CCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAATCTTCA 2170
Query 47128 CTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187
|| ||| | ||| || ||||||||||| ||| ||||| |||||||| || ||
Sbjct 2169 TTC--GCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCT 2112
Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247
| ||| | || || | | || | || | ||||||||||| || || |||||
Sbjct 2111 TCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACG 2052
Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACT-ACAAC 47303
|||| ||||| | || || || || |||||| |||| ||||| || |||| || |
Sbjct 2051 AGCTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTCCCATC 1992
Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361
| ||| || | | ||| || | | | || ||||| | | ||| || |
Sbjct 1991 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATCATCGTCGATGCGG 1941
Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421
|| || ||| |||||| | | || || |||| | | | || ||||||
Sbjct 1940 TCAAGATCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTTGGCATGAACT 1881
Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481
| | |||||| ||||||| || || |||||||||||||| || ||| ||
Sbjct 1880 CCAACTTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTGGTTGCTCTTGGCA 1821
Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541
| |||| | ||| | | || || ||||| || ||| | ||||| || || | |
Sbjct 1820 ACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCG 1761
Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGT 47569
||||||||||||| || |||||||| ||
Sbjct 1760 GCAAGACCAACTTCTTTGAGAAGCGTGT 1733
>seq1773
Length=6176
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| ||| | ||||| || || ||||| || || || |||||
Sbjct 5339 TTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGATC 5280
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| ||||| || || |||||||||||| ||| || ||||| | |||
Sbjct 5279 AAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 5220
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||||| |||||| || | ||| | || || || ||||| || || || |||
Sbjct 5219 ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 5160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475439965616400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |