Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7566 105 6e-18 seq3410 95.1 1e-14 seq1773 89.7 5e-13 >seq7566 Length=2327 Score = 105 bits (116), Expect = 6e-18 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || ||||| || || || ||||| ||| Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACC 1284 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 1283 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 1236 >seq3410 Length=4507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 329/508 (65%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAA--CGTCA 47127 ||||| | || | ||||||||| ||||| | |||| ||| | | || || | ||| Sbjct 2229 CCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAATCTTCA 2170 Query 47128 CTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187 || ||| | ||| || ||||||||||| ||| ||||| |||||||| || || Sbjct 2169 TTC--GCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCT 2112 Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247 | ||| | || || | | || | || | ||||||||||| || || ||||| Sbjct 2111 TCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACG 2052 Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACT-ACAAC 47303 |||| ||||| | || || || || |||||| |||| ||||| || |||| || | Sbjct 2051 AGCTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTCCCATC 1992 Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 | ||| || | | ||| || | | | || ||||| | | ||| || | Sbjct 1991 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATCATCGTCGATGCGG 1941 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421 || || ||| |||||| | | || || |||| | | | || |||||| Sbjct 1940 TCAAGATCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTTGGCATGAACT 1881 Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481 | | |||||| ||||||| || || |||||||||||||| || ||| || Sbjct 1880 CCAACTTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTGGTTGCTCTTGGCA 1821 Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541 | |||| | ||| | | || || ||||| || ||| | ||||| || || | | Sbjct 1820 ACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCG 1761 Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||||||||||||| || |||||||| || Sbjct 1760 GCAAGACCAACTTCTTTGAGAAGCGTGT 1733 >seq1773 Length=6176 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| | ||||| || || ||||| || || || ||||| Sbjct 5339 TTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGATC 5280 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || || |||||||||||| ||| || ||||| | ||| Sbjct 5279 AAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 5220 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || || || ||||| || || || ||| Sbjct 5219 ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 5160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475439965616400