Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2519 215 6e-51 seq3410 100 3e-16 >seq2519 Length=5298 Score = 215 bits (238), Expect = 6e-51 Identities = 956/1490 (64%), Gaps = 59/1490 (4%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || || ||| || | | | |||||||| | ||||| |||||||| ||||| Sbjct 3273 AACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCG 3214 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| |||||||| || | ||| ||| || |||||||| || | ||| || |||| Sbjct 3213 TTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTG 3154 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 |||| ||| | | | || | ||||| || | ||||||||| || | | | | Sbjct 3153 CGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGC 3094 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| ||| |||| ||||| || ||||| | ||||| ||||| | ||| Sbjct 3093 TTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTC 3034 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 | ||||||||||| | | |||| | | || | | |||||| ||||| || Sbjct 3033 TGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGACATGG---TGAGGGCAGCGTGGTAG 2977 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATC---AAACGCGAGA 116229 || ||||| || || ||| ||| ||| ||| || || | || ||| | Sbjct 2976 ATGGTCTCGAAGAT------CTTC-TTG--TTGAGGTCGCGGGCTTCGGGAGACTCGA-A 2927 Query 116230 CGGCA--CAAA-----ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCG 116282 |||| | || | || |||| || ||||| || |||||||||||||| ||||| Sbjct 2926 GGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGCG 2867 Query 116283 ATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCT 116342 || | ||| ||| || ||||| | ||||| ||| || ||||| | || Sbjct 2866 GTGGCGCATGTTACTGTTGCGAGCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCT 2807 Query 116343 ATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCG 116402 || || || ||||||| || | || || ||||| | | | || | | Sbjct 2806 GTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTA---GAC 2750 Query 116403 AGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 116459 | ||| | | | ||| | | ||||| |||| || ||||| || || |||| | Sbjct 2749 ACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGAC 2690 Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 ||| || | | |||||| || || || || |||| || || || |||||| || Sbjct 2689 CTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACC 2630 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 | |||||| || || ||| ||| ||||||||||||||||| | || | || Sbjct 2629 AAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCC 2570 Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGC 116636 ||||| || |||| || || ||||| | ||| | | || | | || || | | || Sbjct 2569 AGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCT-TCATGGTCTTGC 2511 Query 116637 GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC 116696 | | || |||| | || |||||||| || | |||||||||||| || || ||| Sbjct 2510 G-TCCCTTGCCCAT-CTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTC-GCCGTAGC 2454 Query 116697 -CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAA 116755 || | | || || || || || || | |||| ||| | || || ||| | Sbjct 2453 AGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGA 2394 Query 116756 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 116815 | | |||||||||||| || || |||||||| || ||||| || ||| ||| | | Sbjct 2393 CTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCT 2334 Query 116816 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 116875 | || | || ||||| |||| ||||| ||||| | || || |||||||| || | Sbjct 2333 CCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCT 2274 Query 116876 CCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCG 116929 | ||||| | || | | || | |||| |||| |||||| || || | | Sbjct 2273 CAAGGTAGATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCAACGTAGCGAG 2217 Query 116930 CCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 116989 |||| ||| || || |||||||| || | | |||| || ||||| || || Sbjct 2216 CCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGG 2157 Query 116990 GAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 117047 || || ||| | |||| | | ||| | | || || ||||| || ||| Sbjct 2156 CAATGTAGGAGCC--AGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCAT 2099 Query 117048 CTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 117107 ||| ||||| ||||| | |||| || | ||||| || ||||| || || |||| Sbjct 2098 CTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTT 2039 Query 117108 ATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGG 117166 | ||| |||||||||| || | || ||||| ||| ||||||||||||||||| | Sbjct 2038 CATGTCGACGAGGAAGCAGGAGGATAGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTG 1980 Query 117167 TTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGA 117224 | || | ||||| ||| | | |||| ||||||| | |||||| || | ||| Sbjct 1979 TGGGAGAGGCGTGCGTGA--AGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCG 1922 Query 117225 GGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTC 117284 || ||| || || || || | | ||| ||||| | ||||| ||| || | || Sbjct 1921 CTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTC 1862 Query 117285 CATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 | | || || ||| | ||||||| |||||||||| |||| Sbjct 1861 AGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGA 1812 >seq3410 Length=4507 Score = 100 bits (110), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| ||||| |||||||| || || |||||| ||| || ||||||||||| Sbjct 2023 GTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2082 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 2083 ACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2142 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCAT 127707 ||||| || | ||||||| ||| || || || || ||| || |||||| | Sbjct 2143 GGCGAAAGCGACCAGACGCTGGGCGAATGA---AGATTTCTCATCGTTAATCCACTTGAG 2199 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTC 127744 ||||| | |||||||| ||||| || || ||| Sbjct 2200 AGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGTC 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613428709422600