Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 215 6e-51
seq3410 100 3e-16
>seq2519
Length=5298
Score = 215 bits (238), Expect = 6e-51
Identities = 956/1490 (64%), Gaps = 59/1490 (4%)
Strand=Plus/Minus
Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935
||||| || || ||| || | | | |||||||| | ||||| |||||||| |||||
Sbjct 3273 AACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCG 3214
Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995
||||| |||||||| || | ||| ||| || |||||||| || | ||| || ||||
Sbjct 3213 TTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTG 3154
Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 116055
|||| ||| | | | || | ||||| || | ||||||||| || | | | |
Sbjct 3153 CGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGC 3094
Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115
| | | |||||| ||| |||| ||||| || ||||| | ||||| ||||| | |||
Sbjct 3093 TTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTC 3034
Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172
| ||||||||||| | | |||| | | || | | |||||| ||||| ||
Sbjct 3033 TGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGACATGG---TGAGGGCAGCGTGGTAG 2977
Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATC---AAACGCGAGA 116229
|| ||||| || || ||| ||| ||| ||| || || | || ||| |
Sbjct 2976 ATGGTCTCGAAGAT------CTTC-TTG--TTGAGGTCGCGGGCTTCGGGAGACTCGA-A 2927
Query 116230 CGGCA--CAAA-----ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCG 116282
|||| | || | || |||| || ||||| || |||||||||||||| |||||
Sbjct 2926 GGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGCG 2867
Query 116283 ATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCT 116342
|| | ||| ||| || ||||| | ||||| ||| || ||||| | ||
Sbjct 2866 GTGGCGCATGTTACTGTTGCGAGCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCT 2807
Query 116343 ATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCG 116402
|| || || ||||||| || | || || ||||| | | | || | |
Sbjct 2806 GTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTA---GAC 2750
Query 116403 AGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 116459
| ||| | | | ||| | | ||||| |||| || ||||| || || |||| |
Sbjct 2749 ACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGAC 2690
Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519
||| || | | |||||| || || || || |||| || || || |||||| ||
Sbjct 2689 CTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACC 2630
Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579
| |||||| || || ||| ||| ||||||||||||||||| | || | ||
Sbjct 2629 AAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCC 2570
Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGC 116636
||||| || |||| || || ||||| | ||| | | || | | || || | | ||
Sbjct 2569 AGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCT-TCATGGTCTTGC 2511
Query 116637 GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC 116696
| | || |||| | || |||||||| || | |||||||||||| || || |||
Sbjct 2510 G-TCCCTTGCCCAT-CTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTC-GCCGTAGC 2454
Query 116697 -CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAA 116755
|| | | || || || || || || | |||| ||| | || || ||| |
Sbjct 2453 AGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGA 2394
Query 116756 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 116815
| | |||||||||||| || || |||||||| || ||||| || ||| ||| | |
Sbjct 2393 CTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCT 2334
Query 116816 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 116875
| || | || ||||| |||| ||||| ||||| | || || |||||||| || |
Sbjct 2333 CCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCT 2274
Query 116876 CCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCG 116929
| ||||| | || | | || | |||| |||| |||||| || || | |
Sbjct 2273 CAAGGTAGATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCAACGTAGCGAG 2217
Query 116930 CCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 116989
|||| ||| || || |||||||| || | | |||| || ||||| || ||
Sbjct 2216 CCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGG 2157
Query 116990 GAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 117047
|| || ||| | |||| | | ||| | | || || ||||| || |||
Sbjct 2156 CAATGTAGGAGCC--AGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCAT 2099
Query 117048 CTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 117107
||| ||||| ||||| | |||| || | ||||| || ||||| || || ||||
Sbjct 2098 CTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTT 2039
Query 117108 ATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGG 117166
| ||| |||||||||| || | || ||||| ||| ||||||||||||||||| |
Sbjct 2038 CATGTCGACGAGGAAGCAGGAGGATAGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTG 1980
Query 117167 TTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGA 117224
| || | ||||| ||| | | |||| ||||||| | |||||| || | |||
Sbjct 1979 TGGGAGAGGCGTGCGTGA--AGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCG 1922
Query 117225 GGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTC 117284
|| ||| || || || || | | ||| ||||| | ||||| ||| || | ||
Sbjct 1921 CTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTC 1862
Query 117285 CATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334
| | || || ||| | ||||||| |||||||||| ||||
Sbjct 1861 AGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGA 1812
>seq3410
Length=4507
Score = 100 bits (110), Expect = 3e-16
Identities = 153/217 (71%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| ||||| ||||| |||||||| || || |||||| ||| || |||||||||||
Sbjct 2023 GTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2082
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || | || | || ||||||||| ||||| ||
Sbjct 2083 ACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2142
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCAT 127707
||||| || | ||||||| ||| || || || || ||| || |||||| |
Sbjct 2143 GGCGAAAGCGACCAGACGCTGGGCGAATGA---AGATTTCTCATCGTTAATCCACTTGAG 2199
Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTC 127744
||||| | |||||||| ||||| || || |||
Sbjct 2200 AGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGTC 2236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613428709422600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |