Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 141 1e-28
>seq2519
Length=5298
Score = 141 bits (156), Expect = 1e-28
Identities = 455/685 (66%), Gaps = 22/685 (3%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAAT-GGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACAT 203895
|| ||| || ||||||||||| |||| || | || |||||| | | ||||||||||||
Sbjct 3634 CTGGTCAACGGTGAACTGAATAGGCG--CAGCAGC-GGCCTGTGTACGCAGATAGTACAT 3578
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955
||| ||||| || || || ||| ||| | ||||||| | | |||| || |
Sbjct 3577 GCCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGT 3518
Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014
||| || ||||||||| || || ||||| || || ||||| ||| || ||||| |
Sbjct 3517 GGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAA-GGCACCACGATCGG 3459
Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074
| ||||| | | | || ||| || || ||||| || |||||| ||| | ||
Sbjct 3458 CAGCCATCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGAGCCTTGA 3399
Query 204075 TGTGT-TGAGGCACATCTTCCCAC-GTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCA 204131
| | || || || || | || |||| | || ||||| ||||| || | |
Sbjct 3398 CCTCTGTGGGG---ATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGATGATACGGT 3342
Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191
|| || | | || ||| | ||||| || || ||| | || |||||||
Sbjct 3341 TCTTCATGGCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGCCAAGGGTTGA 3282
Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251
|| ||| || || || | || || | || | | | ||| |||| | || || |
Sbjct 3281 CGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAA 3222
Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311
| |||||||||||| || ||||| | |||||||| || |||||||| || | |||||
Sbjct 3221 AACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCA 3162
Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATC 204370
| |||||||| ||||||| | | || |||| |||||||||| |||||| ||
Sbjct 3161 GAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAGAGAGTCCCAGTC--CCAGA 3105
Query 204371 GCACTG--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428
| | | || || || ||||||||| |||||| |||||| || ||| || ||
Sbjct 3104 GGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGC 3045
Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGCG 204487
||| ||||||| | || || ||||||| |||||| ||||| || || | |||
Sbjct 3044 CCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGC-TGCACAGACATGGTGAGGGCA 2986
Query 204488 TGATAGTACATGGTCTCAAAGATCT 204512
| ||| |||||||| |||||||
Sbjct 2985 GCGTGGTAGATGGTCTCGAAGATCT 2961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795053469831600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |