Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2519 141 1e-28 >seq2519 Length=5298 Score = 141 bits (156), Expect = 1e-28 Identities = 455/685 (66%), Gaps = 22/685 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAAT-GGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACAT 203895 || ||| || ||||||||||| |||| || | || |||||| | | |||||||||||| Sbjct 3634 CTGGTCAACGGTGAACTGAATAGGCG--CAGCAGC-GGCCTGTGTACGCAGATAGTACAT 3578 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || || || ||| ||| | ||||||| | | |||| || | Sbjct 3577 GCCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGT 3518 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||| || ||||||||| || || ||||| || || ||||| ||| || ||||| | Sbjct 3517 GGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAA-GGCACCACGATCGG 3459 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | ||||| | | | || ||| || || ||||| || |||||| ||| | || Sbjct 3458 CAGCCATCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGAGCCTTGA 3399 Query 204075 TGTGT-TGAGGCACATCTTCCCAC-GTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | || || || || | || |||| | || ||||| ||||| || | | Sbjct 3398 CCTCTGTGGGG---ATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGATGATACGGT 3342 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | | || ||| | ||||| || || ||| | || ||||||| Sbjct 3341 TCTTCATGGCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGCCAAGGGTTGA 3282 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 || ||| || || || | || || | || | | | ||| |||| | || || | Sbjct 3281 CGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAA 3222 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| || ||||| | |||||||| || |||||||| || | ||||| Sbjct 3221 AACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCA 3162 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATC 204370 | |||||||| ||||||| | | || |||| |||||||||| |||||| || Sbjct 3161 GAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAGAGAGTCCCAGTC--CCAGA 3105 Query 204371 GCACTG--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | | | || || || ||||||||| |||||| |||||| || ||| || || Sbjct 3104 GGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGC 3045 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGCG 204487 ||| ||||||| | || || ||||||| |||||| ||||| || || | ||| Sbjct 3044 CCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGC-TGCACAGACATGGTGAGGGCA 2986 Query 204488 TGATAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||| ||||||| Sbjct 2985 GCGTGGTAGATGGTCTCGAAGATCT 2961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795053469831600