Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 143 3e-29
seq1773 123 3e-23
seq1878 111 2e-19
>seq7566
Length=2327
Score = 143 bits (158), Expect = 3e-29
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 1451 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 1392
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||| ||||| ||||| ||||||||||||| || | | |||||||
Sbjct 1391 TCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTG 1332
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| || ||||| || | |||||
Sbjct 1331 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATA 1272
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || ||||| || || || || ||||| |||||
Sbjct 1271 GTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237
>seq1773
Length=6176
Score = 123 bits (136), Expect = 3e-23
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| || || ||||||||||| || ||||| |||| ||||||||||||||||| || |
Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||||| || | | |||||||||| |||||| ||||| |
Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | || ||||| || |||||||| || || || |
Sbjct 5221 CGATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 5162
Query 46584 A 46584
|
Sbjct 5161 A 5161
>seq1878
Length=6026
Score = 111 bits (122), Expect = 2e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || ||||| |||| || || |||||||| |||||
Sbjct 5741 CTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAA 5800
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||||| || | | |||||| ||| |||||| ||| | |||
Sbjct 5801 GATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTCA-CGT 5859
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || ||||| |||| ||| || || || || |||| || || |
Sbjct 5860 TGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGA 5919
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 5920 CGAAGATCTGCAT 5932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565166084812200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |