Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3410 150 2e-31
seq7566 125 7e-24
seq1773 96.9 3e-15
seq1878 91.5 1e-13
>seq3410
Length=4507
Score = 150 bits (166), Expect = 2e-31
Identities = 294/432 (68%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|||||||| || || || || || ||| ||| ||| | ||| || || |||||||||
Sbjct 1739 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1798
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||| |||| | | || | || || || | |||||| ||||||||
Sbjct 1799 GAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACCAGAAGGCGGTCGGCGACGAACTCA 1858
Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGT 132803
||||| ||| ||| | | | || | || ||||| |||| |||| ||||| ||
Sbjct 1859 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGG-GCACAAGGCAAGGCTTCAGT 1917
Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863
|| || |||||||| |||||| ||| || ||| ||| || | | | |||
Sbjct 1918 CAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATGTCCTCAATGACCTGCTTGCT 1977
Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923
|| || | | | ||| | ||| || ||| || |||||| || | ||||| ||
Sbjct 1978 GGGGCGGTTCTTGAGATGGGAGTACAGCAGGCAGGCGAAGTCGGTGTGGAGTCCCTCATC 2037
Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983
| || ||||| |||||| ||| |||| |||||||||||| || || || ||||||||
Sbjct 2038 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCA 2097
Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043
|| |||| ||||| || ||||||| ||||| ||||| |||||||| |||||
Sbjct 2098 GAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAAAGCGACCAG 2157
Query 133044 GCGCTCGCCGAA 133055
|||| | ||||
Sbjct 2158 ACGCTGGGCGAA 2169
Score = 149 bits (164), Expect = 6e-31
Identities = 199/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 2340 GTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 2399
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||||||||| | |||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct 2400 GCCGTAAAAGCATCTGGCCTCGGGAACCTGTACTTCGCCGCTGAAGCGCTCAACCAGGTT 2459
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||||| ||| ||||||||| ||||| || | |||| |||||| |
Sbjct 2460 CTCGTTGACGATGCCATCGGAGGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 2519
Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||| || | | |||||| | ||||| ||||| || | |||||
Sbjct 2520 CTCATCCTCGTTGATCTTGTTGTTCCAGTCATGGAGATCCTTTGACAGATCAATTTCCTC 2579
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | |||||||| || ||||| || || ||||||||
Sbjct 2580 GGCTGTCCAAAAAGAGGCCTCAGCCTTCTTGTACAT 2615
>seq7566
Length=2327
Score = 125 bits (138), Expect = 7e-24
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 1237 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCC 1296
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || || |||||||
Sbjct 1297 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCAG 1356
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| ||||| || |||| ||||||||| ||||||||||
Sbjct 1357 CAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 1416
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| |||||
Sbjct 1417 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 1451
>seq1773
Length=6176
Score = 96.9 bits (106), Expect = 3e-15
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 5161 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATC 5220
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| ||||||| ||||| |
Sbjct 5221 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTG 5280
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || ||||| ||||| || |||| |||||||| |||||||||||| || |||
Sbjct 5281 ATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAG 5340
Query 38433 G 38433
|
Sbjct 5341 G 5341
>seq1878
Length=6026
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| || || ||||| || || ||||||| ||||| | || | ||| |||||
Sbjct 5848 AAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 5789
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || |||| ||||| || | |||||||||||||| ||||| ||||||| ||
Sbjct 5788 CAACTTGAGGACGGCCGCACACTGAGTGACTACAACATCCAGAAGGAGTCGACGCTTCAC 5729
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGCC 38472
| || || ||| || | |||||||
Sbjct 5728 CTCGTCCTCCGTCTGCGTGGCGGCC 5704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500108809142400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |