Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3410 150 2e-31 seq7566 125 7e-24 seq1773 96.9 3e-15 seq1878 91.5 1e-13 >seq3410 Length=4507 Score = 150 bits (166), Expect = 2e-31 Identities = 294/432 (68%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || ||| ||| ||| | ||| || || ||||||||| Sbjct 1739 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1798 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||| |||| | | || | || || || | |||||| |||||||| Sbjct 1799 GAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACCAGAAGGCGGTCGGCGACGAACTCA 1858 Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGT 132803 ||||| ||| ||| | | | || | || ||||| |||| |||| ||||| || Sbjct 1859 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGG-GCACAAGGCAAGGCTTCAGT 1917 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 || || |||||||| |||||| ||| || ||| ||| || | | | ||| Sbjct 1918 CAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATGTCCTCAATGACCTGCTTGCT 1977 Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923 || || | | | ||| | ||| || ||| || |||||| || | ||||| || Sbjct 1978 GGGGCGGTTCTTGAGATGGGAGTACAGCAGGCAGGCGAAGTCGGTGTGGAGTCCCTCATC 2037 Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983 | || ||||| |||||| ||| |||| |||||||||||| || || || |||||||| Sbjct 2038 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCA 2097 Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 || |||| ||||| || ||||||| ||||| ||||| |||||||| ||||| Sbjct 2098 GAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAAAGCGACCAG 2157 Query 133044 GCGCTCGCCGAA 133055 |||| | |||| Sbjct 2158 ACGCTGGGCGAA 2169 Score = 149 bits (164), Expect = 6e-31 Identities = 199/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 2340 GTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 2399 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||||||||| | |||||| ||||| ||||| ||| ||||| ||||| || Sbjct 2400 GCCGTAAAAGCATCTGGCCTCGGGAACCTGTACTTCGCCGCTGAAGCGCTCAACCAGGTT 2459 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| ||| ||||||||| ||||| || | |||| |||||| | Sbjct 2460 CTCGTTGACGATGCCATCGGAGGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 2519 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | |||||| | ||||| ||||| || | ||||| Sbjct 2520 CTCATCCTCGTTGATCTTGTTGTTCCAGTCATGGAGATCCTTTGACAGATCAATTTCCTC 2579 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | |||||||| || ||||| || || |||||||| Sbjct 2580 GGCTGTCCAAAAAGAGGCCTCAGCCTTCTTGTACAT 2615 >seq7566 Length=2327 Score = 125 bits (138), Expect = 7e-24 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 1237 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCC 1296 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || || ||||||| Sbjct 1297 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCAG 1356 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 1357 CAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 1416 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| ||||| Sbjct 1417 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 1451 >seq1773 Length=6176 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 5161 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATC 5220 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| ||||||| ||||| | Sbjct 5221 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTG 5280 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || |||| |||||||| |||||||||||| || ||| Sbjct 5281 ATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAG 5340 Query 38433 G 38433 | Sbjct 5341 G 5341 >seq1878 Length=6026 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||||| || || ||||||| ||||| | || | ||| ||||| Sbjct 5848 AAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 5789 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || |||| ||||| || | |||||||||||||| ||||| ||||||| || Sbjct 5788 CAACTTGAGGACGGCCGCACACTGAGTGACTACAACATCCAGAAGGAGTCGACGCTTCAC 5729 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGCC 38472 | || || ||| || | ||||||| Sbjct 5728 CTCGTCCTCCGTCTGCGTGGCGGCC 5704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500108809142400