Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq563 255 7e-63 seq4018 140 4e-28 seq2415 140 4e-28 seq5440 104 3e-17 >seq563 Length=8646 Score = 255 bits (282), Expect = 7e-63 Identities = 492/723 (68%), Gaps = 2/723 (0%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | |||||| || ||||| | || ||||| || || |||||||||||||| Sbjct 2317 TCACCGGACAGGATGGCAGCCTGGACGGCGGCACCGTAGGCAACAGCCTCATCGGGGTTG 2258 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || || | | | || || ||| Sbjct 2257 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAAATGAGCTTCTGGATGCGGGGG 2198 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||| | ||||| || | | | || || |||||||| | | Sbjct 2197 ATACGAGTGGAACCTCCGACGAGGACGATCTCGTGGATCTGGGACTTGTCGATCTTGGCG 2138 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || ||||| || | || ||||||| |||| || || ||| Sbjct 2137 TCGGTCAGGACACGGTCGACGGGCTGGATGGTCGAGCGGAACAGGTCCTGGCAGAGCTCC 2078 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || |||||||| ||||| || ||||| |||| || ||| | | ||| || || Sbjct 2077 TCGAAGCGAGCACGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAAGAGCGAGTCGATC 2018 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || ||||| || || || || Sbjct 2017 TCGATGGAGGTCTGGGCGGAAGACGACAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 1958 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| | ||| | || ||||| || || || || ||||| Sbjct 1957 AGACGGCGCAGGGCGCGGGCGTTGCTGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCG 1898 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | ||| | ||||| || |||||||||||||| || || || Sbjct 1897 TTGACGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCA 1838 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||| | ||||| || |||||||| | |||||| | | | || ||||| || ||| Sbjct 1837 GCGGTGGACTTGACCTCGAAGATACCCTCCTCAATGGTCAGGAGGGACACATCGAAGGTA 1778 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||| || || || ||||| ||||| || | || | ||||| || |||||| Sbjct 1777 CCACCACCGAGATCGAAGATGAGAACGTTGCGCTCACCATCGGTCTTCTTGTCAAGACCG 1718 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAAT 7668 || ||||| || || ||||| || || || || || || | |||| || ||||| ||||| Sbjct 1717 TAGGCGATGGCAGCGGCCGTGGGCTCGTTGATGATGCGCAGGACA-TTGAGGCCGGCAAT 1659 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | || || || || || || || || || ||||| |||||||| || ||||| || Sbjct 1658 GAGACCGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGAACCGTGAC 1599 Query 7729 GAC 7731 || Sbjct 1598 AAC 1596 >seq4018 Length=4053 Score = 140 bits (154), Expect = 4e-28 Identities = 229/327 (70%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||| ||| || || || || || || || || |||| ||| Sbjct 2547 TCGAAGTCCTCACCACCCAGGTGGGTGTCACCGGCAGTAGCCAAAACCTCGAAGACACCC 2606 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | || |||||||| || ||||||||||| ||||| | | || | Sbjct 2607 TGGTCAATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAGACGATGA-- 2664 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||| | | | |||| ||||||||||| ||||| || || || || || || Sbjct 2665 -TC-TGGCGCTCGCCATCGGTCTTGTCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTC 2722 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | |||||| || ||| ||||| ||||| | | ||||| || || || || || Sbjct 2723 GTTGACAATACGGAGGACGTTGAGGCCGGCAATGATACCGGCATCCTTGGTGGCCTGACG 2782 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| || || Sbjct 2783 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTGACCTTCTTGCCAAG 2842 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 | || || || | || ||||| || Sbjct 2843 GAAGGACTCGGCAACCTCCTTCATCTT 2869 >seq2415 Length=5400 Score = 140 bits (154), Expect = 4e-28 Identities = 345/518 (67%), Gaps = 9/518 (2%) Strand=Plus/Minus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| ||||| ||||| |||||||| || || | | || |||| ||| | | || Sbjct 4184 CAGGTCCTCGAAACGGGCACGGGTGATCTGAGTGGTGTAGTCCTCGCCATCGAAGAGAGA 4125 Query 7303 ATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || || ||||| || || || || | ||| || ||||| || ||||| || Sbjct 4124 GTCGATCTCGATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAA 4067 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | ||| || |||||||| |||| ||||| | || ||||| || || Sbjct 4066 GCAGTGCGGAGACGGCGGAGGGCACGGGGGTCGCCGGAGAGGTCCTTCTTGGTCTTGCGC 4007 Query 7421 TTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 | || || | | |||| || ||| || | | ||||| || | ||| |||||||| Sbjct 4006 TGGAAGTCCTTCTTGCAGTGGTCCAAGAGGT-TGGTGTCGAAGTCCTGACCTCCCAAGTG 3948 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || || || || || || || || |||| ||| || | ||||| | | ||||| Sbjct 3947 GGTGTCACCGGCAGTAGCCTTAACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAAC 3888 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTT 7596 ||| || ||||||||||||| ||| | || || ||||| || | ||| ||| Sbjct 3887 ATCGAAAGTACCACCACCCAAGTCGTAGATAAGGACGTTGCGCTCCTTGTCAGACTTGCC 3828 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 | | |||||||| || || || || || || || || || || ||||| || ||| Sbjct 3827 AGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTT 3768 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 |||||||| || | | ||||| || || || || || || ||||| |||||||| Sbjct 3767 GAGGCCAGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGC 3708 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||||| || | ||| || | | || ||||| |||| Sbjct 3707 GGGGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 3670 >seq5440 Length=3227 Score = 104 bits (114), Expect = 3e-17 Identities = 227/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||||||||| || || || ||| | || || || |||| ||| Sbjct 2018 TCGAAGTCCTCGCCACCCAAGTGAGTGTCACCATTGGTAGACTTAACCTCGAAGACACCG 1959 Query 7517 CCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | || ||| || | ||| || ||||||||||| || || | | | || Sbjct 1958 TTCTGGAT-CTCAAGAACGGAGATATCGAAGGTACCACCACCAAGATCGTAGACGGCGAC 1900 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || |||||| | ||| || ||||| || || | ||| || || || || || Sbjct 1899 G---ATACGGTCGTC---CTCCTTCTCCAGACCATAGGCCAGAGCAGCAGCAGTAGGCTC 1846 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||| | | ||| ||| ||||||||| ||||| | ||||| || || || || || Sbjct 1845 ATTGACGACACGGAGAACGTTCAGGCCGGCAATCTGACCAGCATCCTTGGTAGCCTGACG 1786 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| || || || ||||| |||| | | || ||| ||| Sbjct 1785 CTGGGAGTCGTTGAAGTAGGCAGGAACGGTAACGACAGCGTTCTTAACGGGCTTGGAGAG 1726 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| ||||||| Sbjct 1725 GTAGGCCTCGGCGGTCTCCTTCATCTTGTTAAGAAC 1690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635051542697400