Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2519 228 1e-54 seq3410 150 2e-31 >seq2519 Length=5298 Score = 228 bits (252), Expect = 1e-54 Identities = 1123/1767 (64%), Gaps = 39/1767 (2%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||||| ||||| | || ||| || || || |||| || | || | Sbjct 1875 ACATGATCATGCGTGTCGCCGTTGGCATCTGGGGTGACGACGTTGAGCGCGTCATCGAAA 1934 Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738 | ||| || ||||||| | | |||| ||||| | || || ||||||||||||| Sbjct 1935 CCTACAACTTGATGTCCAGCAAGTTCTTCACGCACGCCTCTCCCACACTCTTCAACGCTG 1994 Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCA 111798 |||| ||| |||| | ||| || ||||| | | | ||||| ||||| ||| Sbjct 1995 GTACCCCACAGGCCCAGCTATCCTCCTGCTTCCTCGTCGACATGAAGGAAGATTCCATCG 2054 Query 111799 ATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCG 111858 | || || || | ||| |||| || ||| ||||| ||| ||| |||||||||| Sbjct 2055 AGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGTATCG 2114 Query 111859 GGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAAATGGTCA 111916 | || | | || | | |||| | ||| || || || || |||||| Sbjct 2115 GCCTGAATGTTCACCGCATTCGTGCCACT--GGCTCCTACATTGCCGGCACCAATGGTAC 2172 Query 111917 ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCA 111976 || |||| || | || |||||||| || || ||| ||| || ||||| || |||| Sbjct 2173 CTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAACAACACGGCTCGCTACGTTGACCA 2232 Query 111977 AGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGA 112030 | ||| ||||| | || | | || |||| |||||||| |||||||| || Sbjct 2233 GGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCCGA 2289 Query 112031 TATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGCCGC 112088 || | || ||| | || |||| || || || | ||||||| |||| | || Sbjct 2290 CGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAAGGAGGAGGTCCGCGCT--CGT 2347 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || ||||| || ||||||||||| |||||||||||||||||||| ||| ||| || Sbjct 2348 GACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAGAAGAACGGA 2407 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208 | ||| |||| | || || | || || || | |||| | || |||||| Sbjct 2408 GACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGCCGACTGCTACGGCGAGGAG 2467 Query 112209 TTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGCCAG 112266 ||||| ||| | || |||||||| ||| | | | ||| || ||| || | Sbjct 2468 TTTGAGGCCTTGTATGAGAAGTACGA-ACAGATGGGCAAGGGAC-GCAAGACCATGAAGG 2525 Query 112267 CTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATG 112325 || | || | | ||| | ||||| || || | || ||||||||||| | || | ||| Sbjct 2526 CT-CAGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCATG 2584 Query 112326 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 112385 || ||||| || ||| |||| ||||| || || ||||| | ||| || || Sbjct 2585 CTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGC 2644 Query 112386 TCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 112445 || ||||| || || || ||| | || | | || ||| ||||| || ||| Sbjct 2645 TCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGACGAGGTCGCTGTCTGCAAC 2704 Query 112446 CTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTATGA 112504 || || || |||| || |||| | ||| || | || || | | | || | | Sbjct 2705 CTGGCCTCGCTCGCACTTCCCACTTTTGTTGACTACAACGAGGGTGTC-TACGACTTCCA 2763 Query 112505 AAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAA 112564 || |||||||| || || | ||| ||||| |||||| | || || || Sbjct 2764 GAAGCTCCACGAGGTGACCCAGGTTGTTGTTCGCAACCTGAACAGAATCATCGACGTCAA 2823 Query 112565 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 112624 |||||||||| | ||||| || ||| ||| | ||||| || ||||| ||||| Sbjct 2824 CCATTACCCCGTTCAAGAGGCTCGCAACAGTAACATGCGCCACCGCCCCATTGGCCTCGG 2883 Query 112625 TGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGC 112684 ||| || ||||| || |||| ||| | | |||| | || || || |||||| Sbjct 2884 TGTGCAGGGTCTTGCCGATGCTTTCCTGGCTCTTCGCATGCCCTTCGAGTCTCCCGAAGC 2943 Query 112685 GAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTC 112744 || |||| | || || ||||| || || ||||| || || | | Sbjct 2944 CCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCACCATGTCTGT 3003 Query 112745 GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGG 112804 | || |||| | | || || ||||| | || | ||||| || || | || || || Sbjct 3004 GCAGCTGGCTAAAGAGGAGGGCCCATACCAGACGTACGAGGGCTCGCCTGTCTCCCAGGG 3063 Query 112805 GGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCT 112864 | ||||| | ||| |||||| | | || | | | || ||||||||| |||| Sbjct 3064 CATCCTTCAGTATGACATGTGGAATGTCAAGCCTTCGGACCTCTGGGACTGGGACTCTCT 3123 Query 112865 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAAC 112924 ||||| | |||||| || | ||| | || ||| ||| | | || || ||||| || Sbjct 3124 GAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGCGCCCATGCCGAC 3183 Query 112925 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACAT 112984 ||| ||| | || |||||||| || || || || ||||| |||||||| | ||||| Sbjct 3184 TGCCAGCACTTCGCAGATCTTGGGCAACAACGAGTGTTTTGAGCCCTACACCTCAAACAT 3243 Query 112985 CTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGA 113044 ||| | | | | ||| || || ||||| | | |||||| || | | || Sbjct 3244 CTACCAGCGCCGTGTCCTTGCTGGCGAGTTCCAGGTCGTCAACCCTTGGCTTCTTAAGGA 3303 Query 113045 CCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCAT-GGTGAAAGCGG 113100 ||| || || || || |||||| | | |||||| | | |||| | || | | Sbjct 3304 CCTTGTCGACATGGGCCTATGGTCCGATGCCATGAAGAACCGTATCATCGCCGAGAAC-- 3361 Query 113101 GTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAG 113160 ||||| ||||| || ||| | || || || | ||| ||||| || | Sbjct 3362 --GGTTCAATTCAGAACATTCCCAACATCCCCACAGAGGTCAAGGCTCTGTACAAGACCG 3419 Query 113161 TTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTG 113220 ||||||||||| | |||| || | ||||| || ||||||||| |||||||| Sbjct 3420 TTTGGGAAATCTCCCAGCGTACTGTCGTTCAGATGGCTGCCGATCGTGGTGCCTTCATTG 3479 Query 113221 ATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTC 113278 ||| |||| ||| | ||| | |||| | ||| || ||| |||| || | Sbjct 3480 ATC--AGTCGCAGTCGCTCAATATTCACATGAAGGATCCCACTATGGGCAAGATCACCAG 3537 Query 113279 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAA 113338 |||||| | | | |||||| |||||||| ||||| ||||| || || || | | Sbjct 3538 CATGCACTTCGCCGGCTGGAAGCTCGGTCTCAAGACGGGCATGTACTATCTGCGTACACA 3597 Query 113339 GGCAAAGGC-GCGCCCAATTCAGTTCA 113364 ||| || ||| || |||||||||| Sbjct 3598 GGCCGCTGCTGCG-CCTATTCAGTTCA 3623 >seq3410 Length=4507 Score = 150 bits (166), Expect = 2e-31 Identities = 166/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164 |||||||| ||||||| || || || || |||||| | |||||| || ||| || Sbjct 2235 ACAGTTCCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA 2176 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || ||| || || |||| || |||| || || |||||||||||||||||| Sbjct 2175 TC---TTCATTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGC 2119 Query 102225 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||| ||||| ||| | || | |||||||||||||| ||||||||||| || || ||| Sbjct 2118 GGTGCCTTC-GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTT 2060 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||||| ||||||||||| |||||||||||| Sbjct 2059 CTCCAACGAGCTCATCTCTCGTGATGAGGGACTCCAC 2023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620662983769200