Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2519 253 2e-62 seq892 107 2e-18 seq3410 91.5 2e-13 >seq2519 Length=5298 Score = 253 bits (280), Expect = 2e-62 Identities = 1121/1752 (64%), Gaps = 51/1752 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||| ||||| ||||| |||||||| |||||| || | ||||| | | Sbjct 3591 CGCAGATAGTACATGCCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTG 3532 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | || ||| || ||| | || | |||||| |||||||| ||||| Sbjct 3531 ATCTTGCCCATAGTGGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAG 3472 Query 109528 CGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTTCCCAGACAGTC 109584 ||||||||| || ||||| | | || ||| || || |||||||| || ||| Sbjct 3471 GCACCACGATCGGCAGCCATCTGAACGACAGTACGCT---GGGAGATTTCCCAAACGGTC 3415 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||||| | ||||| || ||| |||| ||||| ||||| || ||| | Sbjct 3414 TTGTACAGAGCCTTGACCTCTGTGGGGATGTTGGGAATGTTCTGAATTGA---ACCGTTC 3358 Query 109645 TTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCA 109701 | | |||| | | |||||| | | ||||| || || | | | || | ||| Sbjct 3357 TCGGCGATGATACGGTTCTTCATGGCATCGGACCATAGGCCCA---TGTCGACAAGGTCC 3301 Query 109702 ACAAGATGCTT---GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 |||| || |||||| || || || |||||||| || || |||||||| Sbjct 3300 TTAAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATG 3241 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | |||||||| || |||||||| |||||||| | ||| || | |||| || || Sbjct 3240 TTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTC 3181 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878 |||||||| || | ||| ||| ||| |||| ||| | | ||| | | |||| || Sbjct 3180 GGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGA 3121 Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938 | |||||| || | | | | || | || ||| |||||| || ||||| Sbjct 3120 GAGTCCCAGTCCCAGAGGTC-CGAA-----GGCTTGACATTCCACATGTCATACTGAAGG 3067 Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 | |||| | |||| || |||| | | ||| ||| | ||||| | | |||| | Sbjct 3066 ATGCCCTGGGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGC 3007 Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 | || || || || || || || ||||| || || | || | | | Sbjct 3006 TGCACAGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCG 2947 Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118 || | || | | |||||||| | | | | | || |||| || |||||||| Sbjct 2946 CGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGC 2887 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178 |||||||| ||||||||||| || ||||||| | ||||| || ||||||||| Sbjct 2886 ACACCGAGGCCAATGGGGCGGTGGCGCATGTTACTGTTGCGAGCCTCTTGAACGGGGTAA 2827 Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238 |||| |||||||| | || || || ||| || || | || ||||| Sbjct 2826 TGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGC 2767 Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTG---ACATATTTGGGGAGAGCAATAGAC 110295 || | | | ||| | | | ||| || | | ||| | |||| || || | || Sbjct 2766 TTCTGGAAGTCGTA-GACACC--CTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAG 2710 Query 110296 GCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAG 110355 || || ||||| |||| |||||| || ||| || | || || || |||| | Sbjct 2709 GCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGG 2650 Query 110356 TTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTA 110415 || || || |||| ||| | ||||||||| || ||| |||| |||||||| Sbjct 2649 TTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTG 2590 Query 110416 TAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATC 110474 ||||||||| | ||| | ||||| || ||||| | || || || || | ||| | | || Sbjct 2589 TAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTC 2530 Query 110475 GGCGGCGG---GGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTC 110531 | | | || | |||||| | | || || | |||||||| |||||| | Sbjct 2529 TGAGCCTTCATGGTC--TTGCGTCC-CTTGCCCATC-TGTTCGTACTTCTCATACAAGGC 2474 Query 110532 CTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGA 110591 |||||| |||| ||||| || | | ||| || | ||| || | || | Sbjct 2473 CTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGT 2414 Query 110592 CCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAA 110651 ||| | ||| || ||| || ||||||||||| || || |||||||| | || |||| Sbjct 2413 CCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCA-AGAA 2355 Query 110652 A-AGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCA 110710 | |||||||| || |||| || | || || || ||| || ||||| ||||| | Sbjct 2354 AGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGA 2295 Query 110711 TGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG---ACCCG 110767 || || | |||||| || || || |||| || | || || ||| ||| Sbjct 2294 AGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCAC 2235 Query 110768 CCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGG 110827 |||||| ||| ||||| || ||| |||||||| | |||||||| | || |||| || Sbjct 2234 CCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGG 2175 Query 110828 ATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATAC 110887 | |||||| || || ||| ||| | ||||||||||| ||| | || || | Sbjct 2174 AGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGC 2115 Query 110888 CAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 | |||||||| ||| ||| || | | ||| | ||| |||| || |||| ||||| Sbjct 2114 CGATACCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTGTCATAGATACC 2057 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 || || |||||| |||| || | | || ||||| || || | ||| | | || || Sbjct 2056 CTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGT 1997 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTG 111063 || || ||||||||||| || | || || ||| ||| |||| ||||||| |||| Sbjct 1996 ACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGA--AGAACTTGCTGGACATCAAGTTG 1939 Query 111064 TATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAAC 111123 || || |||| || || || | ||| || |||| ||| || ||||||| | Sbjct 1938 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATC 1879 Query 111124 ATATATTGAGGC 111135 || | ||| ||| Sbjct 1878 ATGTGTTGCGGC 1867 >seq892 Length=7841 Score = 107 bits (118), Expect = 2e-18 Identities = 330/501 (66%), Gaps = 17/501 (3%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | || || | || || || ||| | | ||| ||| | || Sbjct 1217 TCGAAACGGCCGGGACGCATCAGTGCCTTGTCGAGGATGTCGGCTCTGTTGGTACCCGCG 1276 Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | || | ||| | ||| ||| |||||||| || || || | ||| || Sbjct 1277 AGCACCACCA--CCTG-CTCCTGCGTGTTGAAGCCGTCCATCTCGGTAAGGATCTGATTC 1333 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTTACCG 11679 | |||| || ||||| |||||| | ||||| || || | | | ||| Sbjct 1334 AGCGTCGCCTCGCGCTCGTCGTTGCCGCCCATACGGTTGCCCTCCTGTCTCGACCGGCCG 1393 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | ||||| |||||||||||||| | |||||| || ||| || ||| |||| Sbjct 1394 ATGGCGTCGATCTCATCGATGAAGATGATACAAGGAGCGTTCTTCCGCGCCGTCGCGAAC 1453 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT--TTGCGGCAG 11797 || || || || | | || || || ||||||||||| ||||| | || || | Sbjct 1454 AGATCGCGCACTCTGGAAGGACCGACGCCGACGAACATCTCGACGAACTCGGAGCCGCTG 1513 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 || ||||| |||||| || ||||| || || |||| |||||| || ||||||| Sbjct 1514 -ACGCTGAA-GAAGGGCACGCCCGACTCGCCGGCCGTGGCCTTAGCGAGCAGCGTCTTAC 1571 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAA 11915 | || || || | || || || | ||| || || |||||||| || || || || Sbjct 1572 CGGTTCCCGGAGGCCCGGCCAGGATGGCACCGCGCGGGATCTTAGCGCCTAACCTC--TC 1629 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 | ||||||| ||| |||| |||||| || | |||| || |||| |||||| || Sbjct 1630 GAAGCGCTCGGGCGTCTTCAGGAAGCTGACGAACTCCATAATTTCCGTCTTGGCCTCATC 1689 Query 11976 GATACCCTCAACATCGGTGAA 11996 || || |||| ||| |||| Sbjct 1690 CATGCCGGCAACGTCGCTGAA 1710 >seq3410 Length=4507 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/195 (71%), Gaps = 11/195 (6%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| |||||||||||||| || |||| || || |||||||| || Sbjct 2024 TGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCA 2083 Query 119568 CTTTTCTTTAGCCAAAAGATGG-CACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | ||||| ||||| ||||||| | | || | || |||||||| ||||| || Sbjct 2084 CGCTTCTTGAGCCAGAAGATGGACGCGAAGGC-ACCGCTGAAGAAGATACCCTCAACGGC 2142 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT------GTCGAACCACTTGAG 119680 ||||||||||| ||||||| || || | ||| || || | ||||||||| Sbjct 2143 GGCGAAAGCGACCAGACGCTGGGCGAA---TGAAGATTTCTCATCGTTAATCCACTTGAG 2199 Query 119681 AGCCCAGTTGGCCTT 119695 |||||||| |||||| Sbjct 2200 AGCCCAGTCGGCCTT 2214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588900647883000