Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 253 2e-62
seq892 107 2e-18
seq3410 91.5 2e-13
>seq2519
Length=5298
Score = 253 bits (280), Expect = 2e-62
Identities = 1121/1752 (64%), Gaps = 51/1752 (3%)
Strand=Plus/Minus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| ||||| ||||| ||||| |||||||| |||||| || | ||||| | |
Sbjct 3591 CGCAGATAGTACATGCCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTG 3532
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
| ||| | || ||| || ||| | || | |||||| |||||||| |||||
Sbjct 3531 ATCTTGCCCATAGTGGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAG 3472
Query 109528 CGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTTCCCAGACAGTC 109584
||||||||| || ||||| | | || ||| || || |||||||| || |||
Sbjct 3471 GCACCACGATCGGCAGCCATCTGAACGACAGTACGCT---GGGAGATTTCCCAAACGGTC 3415
Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644
||||||| | ||||| || ||| |||| ||||| ||||| || ||| |
Sbjct 3414 TTGTACAGAGCCTTGACCTCTGTGGGGATGTTGGGAATGTTCTGAATTGA---ACCGTTC 3358
Query 109645 TTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCA 109701
| | |||| | | |||||| | | ||||| || || | | | || | |||
Sbjct 3357 TCGGCGATGATACGGTTCTTCATGGCATCGGACCATAGGCCCA---TGTCGACAAGGTCC 3301
Query 109702 ACAAGATGCTT---GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758
|||| || |||||| || || || |||||||| || || ||||||||
Sbjct 3300 TTAAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATG 3241
Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818
|| | |||||||| || |||||||| |||||||| | ||| || | |||| || ||
Sbjct 3240 TTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTC 3181
Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878
|||||||| || | ||| ||| ||| |||| ||| | | ||| | | |||| ||
Sbjct 3180 GGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGA 3121
Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938
| |||||| || | | | | || | || ||| |||||| || |||||
Sbjct 3120 GAGTCCCAGTCCCAGAGGTC-CGAA-----GGCTTGACATTCCACATGTCATACTGAAGG 3067
Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998
| |||| | |||| || |||| | | ||| ||| | ||||| | | |||| |
Sbjct 3066 ATGCCCTGGGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGC 3007
Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058
| || || || || || || || ||||| || || | || | | |
Sbjct 3006 TGCACAGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCG 2947
Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118
|| | || | | |||||||| | | | | | || |||| || ||||||||
Sbjct 2946 CGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGC 2887
Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178
|||||||| ||||||||||| || ||||||| | ||||| || |||||||||
Sbjct 2886 ACACCGAGGCCAATGGGGCGGTGGCGCATGTTACTGTTGCGAGCCTCTTGAACGGGGTAA 2827
Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238
|||| |||||||| | || || || ||| || || | || |||||
Sbjct 2826 TGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGC 2767
Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTG---ACATATTTGGGGAGAGCAATAGAC 110295
|| | | | ||| | | | ||| || | | ||| | |||| || || | ||
Sbjct 2766 TTCTGGAAGTCGTA-GACACC--CTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAG 2710
Query 110296 GCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAG 110355
|| || ||||| |||| |||||| || ||| || | || || || |||| |
Sbjct 2709 GCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGG 2650
Query 110356 TTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTA 110415
|| || || |||| ||| | ||||||||| || ||| |||| ||||||||
Sbjct 2649 TTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTG 2590
Query 110416 TAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATC 110474
||||||||| | ||| | ||||| || ||||| | || || || || | ||| | | ||
Sbjct 2589 TAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTC 2530
Query 110475 GGCGGCGG---GGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTC 110531
| | | || | |||||| | | || || | |||||||| |||||| |
Sbjct 2529 TGAGCCTTCATGGTC--TTGCGTCC-CTTGCCCATC-TGTTCGTACTTCTCATACAAGGC 2474
Query 110532 CTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGA 110591
|||||| |||| ||||| || | | ||| || | ||| || | || |
Sbjct 2473 CTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGT 2414
Query 110592 CCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAA 110651
||| | ||| || ||| || ||||||||||| || || |||||||| | || ||||
Sbjct 2413 CCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCA-AGAA 2355
Query 110652 A-AGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCA 110710
| |||||||| || |||| || | || || || ||| || ||||| ||||| |
Sbjct 2354 AGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGA 2295
Query 110711 TGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG---ACCCG 110767
|| || | |||||| || || || |||| || | || || ||| |||
Sbjct 2294 AGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCAC 2235
Query 110768 CCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGG 110827
|||||| ||| ||||| || ||| |||||||| | |||||||| | || |||| ||
Sbjct 2234 CCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGG 2175
Query 110828 ATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATAC 110887
| |||||| || || ||| ||| | ||||||||||| ||| | || || |
Sbjct 2174 AGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGC 2115
Query 110888 CAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACC 110945
| |||||||| ||| ||| || | | ||| | ||| |||| || |||| |||||
Sbjct 2114 CGATACCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTGTCATAGATACC 2057
Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005
|| || |||||| |||| || | | || ||||| || || | ||| | | || ||
Sbjct 2056 CTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGT 1997
Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTG 111063
|| || ||||||||||| || | || || ||| ||| |||| ||||||| ||||
Sbjct 1996 ACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGA--AGAACTTGCTGGACATCAAGTTG 1939
Query 111064 TATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAAC 111123
|| || |||| || || || | ||| || |||| ||| || ||||||| |
Sbjct 1938 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATC 1879
Query 111124 ATATATTGAGGC 111135
|| | ||| |||
Sbjct 1878 ATGTGTTGCGGC 1867
>seq892
Length=7841
Score = 107 bits (118), Expect = 2e-18
Identities = 330/501 (66%), Gaps = 17/501 (3%)
Strand=Plus/Plus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
|||||||| || || || | || || | || || || ||| | | ||| ||| | ||
Sbjct 1217 TCGAAACGGCCGGGACGCATCAGTGCCTTGTCGAGGATGTCGGCTCTGTTGGTACCCGCG 1276
Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| || || | || | ||| | ||| ||| |||||||| || || || | ||| ||
Sbjct 1277 AGCACCACCA--CCTG-CTCCTGCGTGTTGAAGCCGTCCATCTCGGTAAGGATCTGATTC 1333
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTTACCG 11679
| |||| || ||||| |||||| | ||||| || || | | | |||
Sbjct 1334 AGCGTCGCCTCGCGCTCGTCGTTGCCGCCCATACGGTTGCCCTCCTGTCTCGACCGGCCG 1393
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
| ||||| |||||||||||||| | |||||| || ||| || ||| ||||
Sbjct 1394 ATGGCGTCGATCTCATCGATGAAGATGATACAAGGAGCGTTCTTCCGCGCCGTCGCGAAC 1453
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT--TTGCGGCAG 11797
|| || || || | | || || || ||||||||||| ||||| | || || |
Sbjct 1454 AGATCGCGCACTCTGGAAGGACCGACGCCGACGAACATCTCGACGAACTCGGAGCCGCTG 1513
Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857
|| ||||| |||||| || ||||| || || |||| |||||| || |||||||
Sbjct 1514 -ACGCTGAA-GAAGGGCACGCCCGACTCGCCGGCCGTGGCCTTAGCGAGCAGCGTCTTAC 1571
Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAA 11915
| || || || | || || || | ||| || || |||||||| || || || ||
Sbjct 1572 CGGTTCCCGGAGGCCCGGCCAGGATGGCACCGCGCGGGATCTTAGCGCCTAACCTC--TC 1629
Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975
| ||||||| ||| |||| |||||| || | |||| || |||| |||||| ||
Sbjct 1630 GAAGCGCTCGGGCGTCTTCAGGAAGCTGACGAACTCCATAATTTCCGTCTTGGCCTCATC 1689
Query 11976 GATACCCTCAACATCGGTGAA 11996
|| || |||| ||| ||||
Sbjct 1690 CATGCCGGCAACGTCGCTGAA 1710
>seq3410
Length=4507
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/195 (71%), Gaps = 11/195 (6%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || ||||| |||||||||||||| || |||| || || |||||||| ||
Sbjct 2024 TGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCA 2083
Query 119568 CTTTTCTTTAGCCAAAAGATGG-CACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626
| ||||| ||||| ||||||| | | || | || |||||||| ||||| ||
Sbjct 2084 CGCTTCTTGAGCCAGAAGATGGACGCGAAGGC-ACCGCTGAAGAAGATACCCTCAACGGC 2142
Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT------GTCGAACCACTTGAG 119680
||||||||||| ||||||| || || | ||| || || | |||||||||
Sbjct 2143 GGCGAAAGCGACCAGACGCTGGGCGAA---TGAAGATTTCTCATCGTTAATCCACTTGAG 2199
Query 119681 AGCCCAGTTGGCCTT 119695
|||||||| ||||||
Sbjct 2200 AGCCCAGTCGGCCTT 2214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588900647883000
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