Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 219 5e-52
seq3410 91.5 2e-13
seq6468 87.8 2e-12
>seq2519
Length=5298
Score = 219 bits (242), Expect = 5e-52
Identities = 1180/1856 (64%), Gaps = 71/1856 (4%)
Strand=Plus/Minus
Query 105558 TGAACTGAATTGGGCGC-GCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGT 105616
|||||||||| || ||| || |||| | || ||||||||||| || ||||||||
Sbjct 3623 TGAACTGAATAGG-CGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCTTGAGA 3565
Query 105617 CCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 105676
|| | ||||| || | ||||| | || |||| ||| || ||| | ||||
Sbjct 3564 CCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCTTCATG 3505
Query 105677 AAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAA 105734
|| ||| | ||| |||| | ||||||||| |||||| | || ||||| | ||
Sbjct 3504 TGAATATTGAGCGACTGCGACT--GATCAATGAAGGCACCACGATCGGCAGCCATCTGAA 3447
Query 105735 TGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGA 105794
|||| | ||||||||| || || ||| ||| ||||| || ||||
Sbjct 3446 CGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGAGCCTTGACCTCTGTGGGGA 3387
Query 105795 TATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGG 105854
| | | || || ||||||||||| | | || || | | |||||| | | ||
Sbjct 3386 TGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGG 3327
Query 105855 ACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTC 105914
|||| || || || | || || || | || |||||| | | ||||| |
Sbjct 3326 ACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGCCAAGGGTTGACGACCTGGAACTCGC 3267
Query 105915 CCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTAC 105974
| || ||| | | | | |||||||| | |||||||| ||||| || || || || |
Sbjct 3266 CAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGC 3207
Query 105975 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC 106034
||||||| || | ||| ||| || ||||| || || | | ||| ||| || | ||
Sbjct 3206 CCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACAC 3147
Query 106035 CCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCT 106093
| | | |||||| | ||||| ||| |||||||| || | | || || || |
Sbjct 3146 CGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGCTTGACAT 3087
Query 106094 TCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAG 106153
||| |||| ||| | ||||| | || ||||| || || ||||| | |||| ||
Sbjct 3086 TCC-ACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTCTGGTAT 3028
Query 106154 GAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTC 106212
| || | ||| ||||| | ||||| | |||| ||||| || ||||| ||
Sbjct 3027 GGGCCCTCCTCTTTAGCCAGCTGCACAGACATGGTG-AGGGCAGCGTGGTAGATGGTCTC 2969
Query 106213 AAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCAC 106267
||||| || | || |||||| || || || |||| || | ||
Sbjct 2968 GAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAG 2909
Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327
||| |||| || ||||| || ||||| | ||||| || | ||| ||||| |||
Sbjct 2908 GAAAG-----CATCGGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATGTTA 2854
Query 106328 GACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 106384
|| | ||| || ||| |||||| ||| || ||| |||| || ||| || ||
Sbjct 2853 --CTGTTGCG-AGCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTG 2797
Query 106385 TTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA 106444
||||| || || | || || || || | | || | | | ||| |
Sbjct 2796 CGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTG 2740
Query 106445 TTG---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 106501
| | ||| | | ||||| |||| || |||| ||||| ||||| ||| || |
Sbjct 2739 TAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGA 2680
Query 106502 TCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 106561
| |||||| | || || || |||| ||| || || ||| || || | |||||
Sbjct 2679 GCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTC 2620
Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621
||||| ||||| |||| |||||||||||||||||| |||| | || ||||| |||
Sbjct 2619 TGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTC 2560
Query 106622 TGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCC 106680
|| | || || || || | ||| | | || | | || |||| ||| |||||
Sbjct 2559 TGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCT----TCATGGTCTTG---CGTCC 2507
Query 106681 CTCCGCC------TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGA 106734
|| || |||||||| || | ||| ||||||||||| || |||||
Sbjct 2506 CTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGC 2447
Query 106735 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT 106794
| || || || | || || | ||||| ||| | || || ||| || | |||
Sbjct 2446 CAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTT 2387
Query 106795 CATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTC 106854
|||||| || || |||||||| |||| |||||| || | | || |||| || |
Sbjct 2386 CATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTT 2327
Query 106855 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 106914
|| || || || | || | ||| || | || || |||||||| |||||||| ||
Sbjct 2326 TCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTA 2267
Query 106915 GACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGC 106968
|| || | | || ||||| ||| | || | || ||||| || |||
Sbjct 2266 GATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTT 2210
Query 106969 GTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACG 107028
||| || || |||||||| || | || |||| || |||||| || || |||
Sbjct 2209 GTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTA 2150
Query 107029 AGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT 107088
|| | |||| | | || | | || || ||||| || ||| ||| |||||
Sbjct 2149 GGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGAT 2090
Query 107089 --TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 107146
| ||||| | | | | || || |||||||||| | ||| || || ||||| || ||
Sbjct 2089 CATGGCGCA-AGT-CTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCG 2032
Query 107147 ATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGT 107205
| |||||||| ||| | ||| || || ||| |||||||| |||||||| || || |
Sbjct 2031 ACGAGGAAGCAGGAGGATAGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGA 1973
Query 107206 TGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 107263
||||| ||| | | |||| ||||||| || ||| || || | ||| |||| |
Sbjct 1972 GGCGTGCGTGA--AGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACG 1915
Query 107264 TCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGG 107323
|| || || |||||| | ||| |||||||| | ||||| ||| || | || ||
Sbjct 1914 TCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATC 1855
Query 107324 ATGCCATCGAGCCGTTGA--AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
|||| || ||| |||| || || | || |||| | |||||||| || |||||
Sbjct 1854 TTGCCGTCAAGC--TTGAGGAGGTATGATC-TCTCCAAGGTTTTGAAGCCGAAGTA 1802
>seq3410
Length=4507
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/218 (71%), Gaps = 10/218 (5%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| |||||||| || || || || || || |||||| ||||| |||||||||||
Sbjct 2023 GTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2082
Query 117345 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403
|||||||| | ||| | || | ||| ||| | ||| ||||||||||||||| ||
Sbjct 2083 ACGCTTCTTGAGCCAGAAGATGGACGC-GAAGGCACCGCTGAAGAAGATACCCTCAACGG 2141
Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT----GTCAAACCATTTC 117459
|| || || | || |||| |||||| || ||| ||| | || || ||| ||
Sbjct 2142 CGGCGAAAGCGACCAGACGCTGGGCGAATGA---AGA-TTTCTCATCGTTAATCCACTTG 2197
Query 117460 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497
| ||||| | ||||| || |||||| || || ||
Sbjct 2198 AGAGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGT 2235
>seq6468
Length=11497
Score = 87.8 bits (96), Expect = 2e-12
Identities = 196/293 (67%), Gaps = 10/293 (3%)
Strand=Plus/Minus
Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237
|| ||||||||||||||||||||| || | ||| ||| | ||| ||||| ||| ||||
Sbjct 1772 GAGGAGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAGATGACC 1713
Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCT---TTTCCTTGT--TGAAGACCCAAGATC 169292
||| || |||| | || || || | | | ||||| | ||||| | || |
Sbjct 1712 ATACCG-----CAGACTCTTCGTGTCGGTGTATGTCTGCTTGTGCTTCAGACCAAGGAAC 1658
Query 169293 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352
| ||||| | | || || |||||| ||||| ||| | | ||||||||| |||||
Sbjct 1657 TGCTTGATGTTCTGGATTTCCTGGTTTTTTGTGATCTGGTCGATTGAAGCGTCACGGACG 1598
Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412
||| ||| ||||| || || ||||| || | |||| | | | | || |
Sbjct 1597 TTCAGCATCTTACCACGAAGGGGGAAGACTCCGATGCGATCGGGGTCGAGAATGGCACGG 1538
Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA 169465
|| || || || | | || || || ||||| || |||| |||||| |||||
Sbjct 1537 CCGGCAACAGCCAAACTCTTGGCAGAGTCACCTTCGGTGAGAATGAGAGTACA 1485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589905319331400
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