Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2519 219 5e-52 seq3410 91.5 2e-13 seq6468 87.8 2e-12 >seq2519 Length=5298 Score = 219 bits (242), Expect = 5e-52 Identities = 1180/1856 (64%), Gaps = 71/1856 (4%) Strand=Plus/Minus Query 105558 TGAACTGAATTGGGCGC-GCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGT 105616 |||||||||| || ||| || |||| | || ||||||||||| || |||||||| Sbjct 3623 TGAACTGAATAGG-CGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCTTGAGA 3565 Query 105617 CCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 105676 || | ||||| || | ||||| | || |||| ||| || ||| | |||| Sbjct 3564 CCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCTTCATG 3505 Query 105677 AAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAA 105734 || ||| | ||| |||| | ||||||||| |||||| | || ||||| | || Sbjct 3504 TGAATATTGAGCGACTGCGACT--GATCAATGAAGGCACCACGATCGGCAGCCATCTGAA 3447 Query 105735 TGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGA 105794 |||| | ||||||||| || || ||| ||| ||||| || |||| Sbjct 3446 CGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGAGCCTTGACCTCTGTGGGGA 3387 Query 105795 TATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGG 105854 | | | || || ||||||||||| | | || || | | |||||| | | || Sbjct 3386 TGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGG 3327 Query 105855 ACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTC 105914 |||| || || || | || || || | || |||||| | | ||||| | Sbjct 3326 ACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGCCAAGGGTTGACGACCTGGAACTCGC 3267 Query 105915 CCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTAC 105974 | || ||| | | | | |||||||| | |||||||| ||||| || || || || | Sbjct 3266 CAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGC 3207 Query 105975 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC 106034 ||||||| || | ||| ||| || ||||| || || | | ||| ||| || | || Sbjct 3206 CCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACAC 3147 Query 106035 CCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCT 106093 | | | |||||| | ||||| ||| |||||||| || | | || || || | Sbjct 3146 CGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGCTTGACAT 3087 Query 106094 TCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAG 106153 ||| |||| ||| | ||||| | || ||||| || || ||||| | |||| || Sbjct 3086 TCC-ACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTCTGGTAT 3028 Query 106154 GAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTC 106212 | || | ||| ||||| | ||||| | |||| ||||| || ||||| || Sbjct 3027 GGGCCCTCCTCTTTAGCCAGCTGCACAGACATGGTG-AGGGCAGCGTGGTAGATGGTCTC 2969 Query 106213 AAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCAC 106267 ||||| || | || |||||| || || || |||| || | || Sbjct 2968 GAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAG 2909 Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 ||| |||| || ||||| || ||||| | ||||| || | ||| ||||| ||| Sbjct 2908 GAAAG-----CATCGGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATGTTA 2854 Query 106328 GACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 106384 || | ||| || ||| |||||| ||| || ||| |||| || ||| || || Sbjct 2853 --CTGTTGCG-AGCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTG 2797 Query 106385 TTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA 106444 ||||| || || | || || || || | | || | | | ||| | Sbjct 2796 CGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTG 2740 Query 106445 TTG---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 106501 | | ||| | | ||||| |||| || |||| ||||| ||||| ||| || | Sbjct 2739 TAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGA 2680 Query 106502 TCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 106561 | |||||| | || || || |||| ||| || || ||| || || | ||||| Sbjct 2679 GCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTC 2620 Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 ||||| ||||| |||| |||||||||||||||||| |||| | || ||||| ||| Sbjct 2619 TGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTC 2560 Query 106622 TGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCC 106680 || | || || || || | ||| | | || | | || |||| ||| ||||| Sbjct 2559 TGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCT----TCATGGTCTTG---CGTCC 2507 Query 106681 CTCCGCC------TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGA 106734 || || |||||||| || | ||| ||||||||||| || ||||| Sbjct 2506 CTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGC 2447 Query 106735 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT 106794 | || || || | || || | ||||| ||| | || || ||| || | ||| Sbjct 2446 CAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTT 2387 Query 106795 CATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTC 106854 |||||| || || |||||||| |||| |||||| || | | || |||| || | Sbjct 2386 CATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTT 2327 Query 106855 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 106914 || || || || | || | ||| || | || || |||||||| |||||||| || Sbjct 2326 TCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTA 2267 Query 106915 GACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGC 106968 || || | | || ||||| ||| | || | || ||||| || ||| Sbjct 2266 GATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTT 2210 Query 106969 GTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACG 107028 ||| || || |||||||| || | || |||| || |||||| || || ||| Sbjct 2209 GTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTA 2150 Query 107029 AGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT 107088 || | |||| | | || | | || || ||||| || ||| ||| ||||| Sbjct 2149 GGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGAT 2090 Query 107089 --TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 107146 | ||||| | | | | || || |||||||||| | ||| || || ||||| || || Sbjct 2089 CATGGCGCA-AGT-CTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCG 2032 Query 107147 ATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGT 107205 | |||||||| ||| | ||| || || ||| |||||||| |||||||| || || | Sbjct 2031 ACGAGGAAGCAGGAGGATAGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGA 1973 Query 107206 TGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 107263 ||||| ||| | | |||| ||||||| || ||| || || | ||| |||| | Sbjct 1972 GGCGTGCGTGA--AGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACG 1915 Query 107264 TCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGG 107323 || || || |||||| | ||| |||||||| | ||||| ||| || | || || Sbjct 1914 TCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATC 1855 Query 107324 ATGCCATCGAGCCGTTGA--AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 |||| || ||| |||| || || | || |||| | |||||||| || ||||| Sbjct 1854 TTGCCGTCAAGC--TTGAGGAGGTATGATC-TCTCCAAGGTTTTGAAGCCGAAGTA 1802 >seq3410 Length=4507 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/218 (71%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| |||||||| || || || || || || |||||| ||||| ||||||||||| Sbjct 2023 GTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2082 Query 117345 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403 |||||||| | ||| | || | ||| ||| | ||| ||||||||||||||| || Sbjct 2083 ACGCTTCTTGAGCCAGAAGATGGACGC-GAAGGCACCGCTGAAGAAGATACCCTCAACGG 2141 Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT----GTCAAACCATTTC 117459 || || || | || |||| |||||| || ||| ||| | || || ||| || Sbjct 2142 CGGCGAAAGCGACCAGACGCTGGGCGAATGA---AGA-TTTCTCATCGTTAATCCACTTG 2197 Query 117460 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 | ||||| | ||||| || |||||| || || || Sbjct 2198 AGAGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGT 2235 >seq6468 Length=11497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/293 (67%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 || ||||||||||||||||||||| || | ||| ||| | ||| ||||| ||| |||| Sbjct 1772 GAGGAGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAGATGACC 1713 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCT---TTTCCTTGT--TGAAGACCCAAGATC 169292 ||| || |||| | || || || | | | ||||| | ||||| | || | Sbjct 1712 ATACCG-----CAGACTCTTCGTGTCGGTGTATGTCTGCTTGTGCTTCAGACCAAGGAAC 1658 Query 169293 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352 | ||||| | | || || |||||| ||||| ||| | | ||||||||| ||||| Sbjct 1657 TGCTTGATGTTCTGGATTTCCTGGTTTTTTGTGATCTGGTCGATTGAAGCGTCACGGACG 1598 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 ||| ||| ||||| || || ||||| || | |||| | | | | || | Sbjct 1597 TTCAGCATCTTACCACGAAGGGGGAAGACTCCGATGCGATCGGGGTCGAGAATGGCACGG 1538 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA 169465 || || || || | | || || || ||||| || |||| |||||| ||||| Sbjct 1537 CCGGCAACAGCCAAACTCTTGGCAGAGTCACCTTCGGTGAGAATGAGAGTACA 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589905319331400