Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 125 2e-23
seq1773 111 3e-19
seq2519 93.3 9e-14
>seq7566
Length=2327
Score = 125 bits (138), Expect = 2e-23
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| || || | || || |||
Sbjct 1445 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 1386
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || || || || || ||||| ||
Sbjct 1385 AGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGG 1326
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 1325 ATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTA 1266
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153
|| || | || || ||||| | ||||| || ||||||
Sbjct 1265 CCCGTGAGGGTCTTCACGAAGATCTGCATGATTGCCTACTTG 1224
>seq1773
Length=6176
Score = 111 bits (122), Expect = 3e-19
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| ||||| ||||| |||| ||| || | || || ||||||||||| || || |||||
Sbjct 5339 TTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGATC 5280
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| || || ||||| || || || || || ||||| || || || |||||| || ||
Sbjct 5279 AAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 5220
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| |||||||| || || |||||||||| ||||| || |||| || || |||||
Sbjct 5219 ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 5161
>seq2519
Length=5298
Score = 93.3 bits (102), Expect = 9e-14
Identities = 188/274 (69%), Gaps = 4/274 (1%)
Strand=Plus/Plus
Query 160595 GCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTT 160654
||| |||||| | ||||||| |||||||||||||| | | || || || |||| |||
Sbjct 2360 GCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAGAAGAACGGAGACTGGACTCTT 2419
Query 160655 TTCTGTCCCAATGAAGCGCCTGGACTTGAT-GATGTTTATGGTTCCGAGTTCGAGACTCT 160713
| || |||||||| | ||| || |||| || || || ||||| ||| | |
Sbjct 2420 ATGTGCCCCAATGA-GTGCCCGGGCTTGGCCGACTGCTACGGCGAGGAGTTTGAGGCCTT 2478
Query 160714 TTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGT 160772
||||| | |||||| | ||| ||| | | || | | ||||||| || | || |
Sbjct 2479 GTATGAGAAGTACGAACAGATGGGCAAGGGACGCAA-GACCATGAAGGCTCAGAAGCTCT 2537
Query 160773 GGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATG 160832
|| || ||||||| ||||| |||| || | ||||| || ||||||||||
Sbjct 2538 GGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTCTACAAGGATG 2597
Query 160833 CCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866
|| | |||||||| |||||||||||| ||||
Sbjct 2598 CCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 2631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109336107090245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |