Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7566 125 2e-23 seq1773 111 3e-19 seq2519 93.3 9e-14 >seq7566 Length=2327 Score = 125 bits (138), Expect = 2e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | || || ||| Sbjct 1445 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 1386 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || || || || ||||| || Sbjct 1385 AGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGG 1326 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || ||||| |||||||| | ||||| Sbjct 1325 ATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTA 1266 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153 || || | || || ||||| | ||||| || |||||| Sbjct 1265 CCCGTGAGGGTCTTCACGAAGATCTGCATGATTGCCTACTTG 1224 >seq1773 Length=6176 Score = 111 bits (122), Expect = 3e-19 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||| ||||| |||| ||| || | || || ||||||||||| || || ||||| Sbjct 5339 TTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGATC 5280 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || || || || || ||||| || || || |||||| || || Sbjct 5279 AAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 5220 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||||||| || || |||||||||| ||||| || |||| || || ||||| Sbjct 5219 ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 5161 >seq2519 Length=5298 Score = 93.3 bits (102), Expect = 9e-14 Identities = 188/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 160595 GCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTT 160654 ||| |||||| | ||||||| |||||||||||||| | | || || || |||| ||| Sbjct 2360 GCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAGAAGAACGGAGACTGGACTCTT 2419 Query 160655 TTCTGTCCCAATGAAGCGCCTGGACTTGAT-GATGTTTATGGTTCCGAGTTCGAGACTCT 160713 | || |||||||| | ||| || |||| || || || ||||| ||| | | Sbjct 2420 ATGTGCCCCAATGA-GTGCCCGGGCTTGGCCGACTGCTACGGCGAGGAGTTTGAGGCCTT 2478 Query 160714 TTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGT 160772 ||||| | |||||| | ||| ||| | | || | | ||||||| || | || | Sbjct 2479 GTATGAGAAGTACGAACAGATGGGCAAGGGACGCAA-GACCATGAAGGCTCAGAAGCTCT 2537 Query 160773 GGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATG 160832 || || ||||||| ||||| |||| || | ||||| || |||||||||| Sbjct 2538 GGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTCTACAAGGATG 2597 Query 160833 CCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 || | |||||||| |||||||||||| |||| Sbjct 2598 CCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 2631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109336107090245