Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1773 84.2 1e-11 >seq1773 Length=6176 Score = 84.2 bits (92), Expect = 1e-11 Identities = 125/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| |||||| | || | || || ||||| || ||||| || || Sbjct 5339 TTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGATC 5280 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | || |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 5279 AAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 5220 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || | || || ||| || || | ||| ||||| || ||||| || |||||||| || Sbjct 5219 ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 5161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324593105509080