Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5440 96.9 3e-14 >seq5440 Length=3227 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||| | | || || | || || || || || || || ||||| || ||||| ||||| Sbjct 1738 GTTAAGAACGCTGTCGTTACCGTTCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACC 1797 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || |||||||| | ||||| || || || ||||| ||| | ||||||| ||||||||| Sbjct 1798 AAGGATGCTGGTCAGATTGCCGGCCTGAACGTTCTCCGTGTCGTCAATGAGCCTACTGCT 1857 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| || || ||||| || || || Sbjct 1858 GCTGCTCTGGCCTATGGTCTGGAGAA 1883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028754727040150