Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 132 4e-26
>seq3288
Length=4615
Score = 132 bits (146), Expect = 4e-26
Identities = 421/654 (64%), Gaps = 49/654 (7%)
Strand=Plus/Minus
Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835
||||| || | ||| ||||| ||| || | || ||||| || ||||||||| |||
Sbjct 1207 CTGGGTTCGCGCTCCAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCG 1148
Query 29836 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894
|| |||| | ||| | || || || || | || || || | || |||||||
Sbjct 1147 TCGCCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACGCGCGCGCAATCATGTG 1089
Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954
||| || | || ||||||||||||||| ||||| || ||||| ||||| || | ||||
Sbjct 1088 CGTTAGCAAAGCGTAGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCG 1029
Query 29955 CTGGTAGAGCTGACACGAGAG---------------CTCT-------------------- 29979
|||||| ||||| || || ||||
Sbjct 1028 CTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGC 969
Query 29980 CCGTCGCTC----ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|||| | | ||||| ||||| | ||||| ||||| || || || |||||
Sbjct 968 CCGTGGGTACGAAACGTAGAACTGCGCAAACATG---TGGCATGGGGGGAGGGCCATCTT 912
Query 30033 GCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 30092
|| ||| ||||||||| |||| || || |||||| | ||| | ||||| || |
Sbjct 911 CTTCAGGTCGGCGGGGTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTT 852
Query 30093 GATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCA 30151
|| || | | | || || ||||| || || ||| |||| ||| || | | |
Sbjct 851 GAGCTTGTGGATGAC-TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGG 793
Query 30152 TGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30211
|| |||||| || |||||||||||||| ||||| |||||||| || || ||||| |
Sbjct 792 AATCGACGTACTCGGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGC 733
Query 30212 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30271
| || | |||| || ||| |||| | || || | || |||||| ||||||
Sbjct 732 CGATCTCGCGGTGCGTGAGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCC 673
Query 30272 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30331
||||||| || ||| |||| || | ||| |||| ||| || ||||||||
Sbjct 672 AGATCTTGACGCCCGCCTCGCTCAGGGCGAGAGAGGATGTGTTGCCTTCGATGAACCACA 613
Query 30332 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385
||||||| | | |||||| ||||| | ||| || |||||||||||||
Sbjct 612 GCAGCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGGAA 559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408566629423655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |