Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 324 3e-83
seq3410 172 1e-37
>seq2519
Length=5298
Score = 324 bits (358), Expect = 3e-83
Identities = 1252/1935 (65%), Gaps = 84/1935 (4%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | || ||||||| |||| || || |||||||||||||| |||||
Sbjct 3627 ACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCTTG 3568
Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668
|| || ||| ||||||| | |||||| |||| ||| |||| | || |
Sbjct 3567 AGACCGAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGA---TCTTGCCCATAGTG-- 3517
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
|| ||||| || || | || || ||||| ||| || ||||| | |
Sbjct 3516 --GG--ATCCTT------CATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACC 3467
Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788
| || || ||||| | | || | | |||||||| ||||| ||||||||| | |
Sbjct 3466 ACGATCGGCAGCCATCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAG 3407
Query 212789 TTCTTTGAGGTCCTCTG---GGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---AT 212842
| |||| |||||| ||| | ||| |||||||| | || || | | ||
Sbjct 3406 AGCCTTGA---CCTCTGTGGGGATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGAT 3350
Query 212843 GGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902
| | | | | |||| | ||| ||| |||||| || | ||| ||| | ||
Sbjct 3349 GATACGGTTCTT---CATGGCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAG 3293
Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962
||||||||| | |||||| || || | || || | | |||||| | |||||| ||
Sbjct 3292 CCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGT 3233
Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022
||||||||| | | ||||||||| |||| ||||| | ||||||||| || ||||||||
Sbjct 3232 GTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGG 3173
Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082
|| || || ||| ||| | || ||||||| ||| | | || || | |
Sbjct 3172 CGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTG-CTCCT----TCAGAG-A 3119
Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142
|||||| | ||||| ||||| ||| || |||||||||||| |||| | ||||||
Sbjct 3118 GTCCCAG-TCCCAGA--GGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCC 3062
Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202
| | || || ||||| ||| | ||| ||||| | ||| || ||||||| |||
Sbjct 3061 CTGGGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCT-GCA 3003
Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261
||| |||||||||| ||||||||| || || |||| | ||||||| | ||
Sbjct 3002 CAGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGG 2943
Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321
| || || ||| ||||||||| | |||| |||| || || ||||| || |
Sbjct 2942 CTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACAC 2883
Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380
||| ||| ||||| | ||| | || |||| ||| |||| ||| | | ||||||| |
Sbjct 2882 CGAGGCCAATGGGGCGGTGGCGCATGTTACTGTTGCGAGC-CTCTTGAACGGGGTAATGG 2824
Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440
||| ||||||||| |||| |||||||| | || | ||| || | | || | |
Sbjct 2823 TTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTC 2764
Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTG 213494
| | || ||||| | || || | ||||| || || |||| |
Sbjct 2763 TGG------AAGTCGTAGACACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAG 2710
Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554
||||||||||| || || ||||| | || | |||||| |||||||| |||||||||
Sbjct 2709 GCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGG 2650
Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614
|| || || ||||| || ||||||| ||||| ||| |||||| | |||||||
Sbjct 2649 TTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTG 2590
Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674
||||||||| ||||| || ||||| ||||| | | || || |||||| | |
Sbjct 2589 TAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTC 2530
Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCC--TCGTACTGTTCGTAGAGCT 213732
||||| | | || | | || || | | ||||||| || || |
Sbjct 2529 TGAGCCTTCATG----GTCTTGCGTC-CCTTGCCCATCTGTTCGTACTTCTCATACAAGG 2475
Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGC 213792
| | || || | ||| || | ||| ||||| || ||| ||||| ||
Sbjct 2474 CCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAG 2415
Query 213793 TCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTG 213851
||||||| |||| | |||| |||||||| |||||| || || || | ||| || ||
Sbjct 2414 TCCAGTCTCCGTTCTTCTC-GACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGA 2356
Query 213852 AACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCA 213911
|| ||||| | | | ||| ||| ||| || ||||||||||| | |||||
Sbjct 2355 AAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCG 2296
Query 213912 AAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCG 213968
|||| ||| |||||||| ||||| | ||||||||||||||| || || | |||| ||
Sbjct 2295 AAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCA 2236
Query 213969 CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG 214028
|||||||| || | ||| ||||||||| || || | || || | || |||
Sbjct 2235 CCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTG 2176
Query 214029 GACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGA 214086
|| || ||||| || || || || ||||| | ||| | | | || ||| |
Sbjct 2175 GAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACAT--TCA 2118
Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146
| || || |||||||| |||||||||||||||||| | | | || || ||| |
Sbjct 2117 GGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATAC 2058
Query 214147 CGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GAC 214205
| | ||| || || | | || | | ||||||| || |||| ||||||| |
Sbjct 2057 CCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCT-GGGCCTGTGGG 1999
Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265
| |||| |||||| || ||||| ||| || | | |||||| | || | | ||
Sbjct 1998 GTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTG 1939
Query 214266 TAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGC 214325
||||| || | ||| | ||||| ||| | ||| | ||| | |
Sbjct 1938 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATC 1879
Query 214326 ATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCC 214382
||||| || |||||||| | | || ||| | | |||||| ||||| || | ||||
Sbjct 1878 ATGTGTTGCGGCCTCTC-AGCGATC--TTGCCGTCAAGCTTGAGGAGGTATGATCTCTCC 1822
Query 214383 AGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCC 214442
| || ||||| || ||||| |||| | ||| ||| || | ||||| |||
Sbjct 1821 AAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGTCG 1762
Query 214443 AGCTCTTCCGCGTGC 214457
||||||||| ||||
Sbjct 1761 AGCTCTTCCTTGTGC 1747
>seq3410
Length=4507
Score = 172 bits (190), Expect = 1e-37
Identities = 347/506 (69%), Gaps = 13/506 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | |||||||||||||| ||||| || ||| |||||||||||
Sbjct 1720 CTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 1779
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
||||||| ||||||||||| | || || ||| |||| ||| | |||| |
Sbjct 1780 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAGAA 1838
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
|| | || |||||| |||| ||||| | ||| | | || ||||||||| | ||||
Sbjct 1839 GGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGGG 1898
Query 48018 ACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||| ||||| || | || || ||||||| ||| |||| || || || | | ||
Sbjct 1899 -CACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATG 1957
Query 48077 TGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133
| || || | || ||| || | || ||| || || || || |||| ||||
Sbjct 1958 TCCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGATG---GGAGTACAGCAGGCAG 2011
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|| ||||| |||| | || || || || ||||||| ||||||||||| || ||
Sbjct 2012 GCGAAGTCGGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCG 2071
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||||| || | || ||||||||||| || | |||||| | || |||||||||
Sbjct 2072 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATA 2131
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
||||| || || ||||| ||| || | || |||| |||| |||| || |||
Sbjct 2132 CCCTCAACGGCGGCGAAAGCGACCAGACGCTGGGCGAATGAAGATTTCTCATCGTTAATC 2191
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTT 48339
|| || |||||||| ||||| ||
Sbjct 2192 CACTTGAGAGCCCAGTCGGCCTTTTT 2217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931413622022400
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