Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2519 324 3e-83 seq3410 172 1e-37 >seq2519 Length=5298 Score = 324 bits (358), Expect = 3e-83 Identities = 1252/1935 (65%), Gaps = 84/1935 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || ||||||| |||| || || |||||||||||||| ||||| Sbjct 3627 ACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATGCCCGTCTTG 3568 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||||||| | |||||| |||| ||| |||| | || | Sbjct 3567 AGACCGAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGA---TCTTGCCCATAGTG-- 3517 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 || ||||| || || | || || ||||| ||| || ||||| | | Sbjct 3516 --GG--ATCCTT------CATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACC 3467 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | || || ||||| | | || | | |||||||| ||||| ||||||||| | | Sbjct 3466 ACGATCGGCAGCCATCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAG 3407 Query 212789 TTCTTTGAGGTCCTCTG---GGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---AT 212842 | |||| |||||| ||| | ||| |||||||| | || || | | || Sbjct 3406 AGCCTTGA---CCTCTGTGGGGATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCGAT 3350 Query 212843 GGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902 | | | | | |||| | ||| ||| |||||| || | ||| ||| | || Sbjct 3349 GATACGGTTCTT---CATGGCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAG 3293 Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962 ||||||||| | |||||| || || | || || | | |||||| | |||||| || Sbjct 3292 CCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGT 3233 Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 ||||||||| | | ||||||||| |||| ||||| | ||||||||| || |||||||| Sbjct 3232 GTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGG 3173 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 || || || ||| ||| | || ||||||| ||| | | || || | | Sbjct 3172 CGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTG-CTCCT----TCAGAG-A 3119 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| | ||||| ||||| ||| || |||||||||||| |||| | |||||| Sbjct 3118 GTCCCAG-TCCCAGA--GGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCC 3062 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | | || || ||||| ||| | ||| ||||| | ||| || ||||||| ||| Sbjct 3061 CTGGGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCT-GCA 3003 Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 ||| |||||||||| ||||||||| || || |||| | ||||||| | || Sbjct 3002 CAGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGG 2943 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 | || || ||| ||||||||| | |||| |||| || || ||||| || | Sbjct 2942 CTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACAC 2883 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 ||| ||| ||||| | ||| | || |||| ||| |||| ||| | | ||||||| | Sbjct 2882 CGAGGCCAATGGGGCGGTGGCGCATGTTACTGTTGCGAGC-CTCTTGAACGGGGTAATGG 2824 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| ||||||||| |||| |||||||| | || | ||| || | | || | | Sbjct 2823 TTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTC 2764 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTG 213494 | | || ||||| | || || | ||||| || || |||| | Sbjct 2763 TGG------AAGTCGTAGACACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAG 2710 Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 ||||||||||| || || ||||| | || | |||||| |||||||| ||||||||| Sbjct 2709 GCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGG 2650 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 || || || ||||| || ||||||| ||||| ||| |||||| | ||||||| Sbjct 2649 TTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTG 2590 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 ||||||||| ||||| || ||||| ||||| | | || || |||||| | | Sbjct 2589 TAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTC 2530 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCC--TCGTACTGTTCGTAGAGCT 213732 ||||| | | || | | || || | | ||||||| || || | Sbjct 2529 TGAGCCTTCATG----GTCTTGCGTC-CCTTGCCCATCTGTTCGTACTTCTCATACAAGG 2475 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGC 213792 | | || || | ||| || | ||| ||||| || ||| ||||| || Sbjct 2474 CCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAG 2415 Query 213793 TCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTG 213851 ||||||| |||| | |||| |||||||| |||||| || || || | ||| || || Sbjct 2414 TCCAGTCTCCGTTCTTCTC-GACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGA 2356 Query 213852 AACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCA 213911 || ||||| | | | ||| ||| ||| || ||||||||||| | ||||| Sbjct 2355 AAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCG 2296 Query 213912 AAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCG 213968 |||| ||| |||||||| ||||| | ||||||||||||||| || || | |||| || Sbjct 2295 AAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCA 2236 Query 213969 CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG 214028 |||||||| || | ||| ||||||||| || || | || || | || ||| Sbjct 2235 CCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTG 2176 Query 214029 GACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGA 214086 || || ||||| || || || || ||||| | ||| | | | || ||| | Sbjct 2175 GAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACAT--TCA 2118 Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146 | || || |||||||| |||||||||||||||||| | | | || || ||| | Sbjct 2117 GGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATAC 2058 Query 214147 CGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GAC 214205 | | ||| || || | | || | | ||||||| || |||| ||||||| | Sbjct 2057 CCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCT-GGGCCTGTGGG 1999 Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265 | |||| |||||| || ||||| ||| || | | |||||| | || | | || Sbjct 1998 GTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTG 1939 Query 214266 TAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGC 214325 ||||| || | ||| | ||||| ||| | ||| | ||| | | Sbjct 1938 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATC 1879 Query 214326 ATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCC 214382 ||||| || |||||||| | | || ||| | | |||||| ||||| || | |||| Sbjct 1878 ATGTGTTGCGGCCTCTC-AGCGATC--TTGCCGTCAAGCTTGAGGAGGTATGATCTCTCC 1822 Query 214383 AGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCC 214442 | || ||||| || ||||| |||| | ||| ||| || | ||||| ||| Sbjct 1821 AAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGTCG 1762 Query 214443 AGCTCTTCCGCGTGC 214457 ||||||||| |||| Sbjct 1761 AGCTCTTCCTTGTGC 1747 >seq3410 Length=4507 Score = 172 bits (190), Expect = 1e-37 Identities = 347/506 (69%), Gaps = 13/506 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || ||| ||||||||||| Sbjct 1720 CTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 1779 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||||||| ||||||||||| | || || ||| |||| ||| | |||| | Sbjct 1780 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAGAA 1838 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||| ||||| | ||| | | || ||||||||| | |||| Sbjct 1839 GGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGGG 1898 Query 48018 ACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||||| || | || || ||||||| ||| |||| || || || | | || Sbjct 1899 -CACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATG 1957 Query 48077 TGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 | || || | || ||| || | || ||| || || || || |||| |||| Sbjct 1958 TCCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGATG---GGAGTACAGCAGGCAG 2011 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| |||| | || || || || ||||||| ||||||||||| || || Sbjct 2012 GCGAAGTCGGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCG 2071 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| || | |||||| | || ||||||||| Sbjct 2072 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATA 2131 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || ||||| ||| || | || |||| |||| |||| || ||| Sbjct 2132 CCCTCAACGGCGGCGAAAGCGACCAGACGCTGGGCGAATGAAGATTTCTCATCGTTAATC 2191 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTT 48339 || || |||||||| ||||| || Sbjct 2192 CACTTGAGAGCCCAGTCGGCCTTTTT 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931413622022400