Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 320 3e-82
seq3410 150 3e-31
>seq2519
Length=5298
Score = 320 bits (354), Expect = 3e-82
Identities = 887/1337 (66%), Gaps = 61/1337 (5%)
Strand=Plus/Minus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCA-AGACTGCGTCAGGGC 221424
|| ||||||| || ||| || || | | || ||| | ||| |||| || |||||
Sbjct 3045 CCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCT-GCACAGACATGGTGAGGGC 2987
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGGAGAAGTGA 221483
|||||||||||||||||| |||||| |||||||||| || | ||| |||||||| ||
Sbjct 2986 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCG-GGCTTCGGGAGACTCGA 2928
Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543
||||||| || || | | || | ||||| || ||||| || |||| || ||||| |
Sbjct 2927 AGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGC 2868
Query 221544 TGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
||| | | |||| | ||| || ||| | ||||| ||| |||||||||||| |
Sbjct 2867 GGTGGCGCATGTTACTGTTGCGA--GCCTCTTGAACGGGGTAATGGTTGACGTCGATGAT 2810
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661
|||| ||||| || || ||| |||| ||||| || ||| | || |
Sbjct 2809 TCTGTTCAGGTTGCGA------AC---AACAACCTGGGTCACCTCGTGGAGCTT---CTG 2762
Query 221662 CAACTCGCCG---CCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718
|| ||| | || |||| | | || ||||||| | || || | ||||||
Sbjct 2761 GAAGTCGTAGACACCCTCGTTGTAG---TCAACAAAAGTGGGAAGTGCGAGCGAGGCCAG 2705
Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT--- 221775
||| || || || |||||||| | |||| |||||||| || || |||||
Sbjct 2704 GTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGA 2645
Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835
||||| ||||| || |||| || || || |||||| ||||| || ||||||||
Sbjct 2644 GCTGCGA---ATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTA 2588
Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895
|||||| ||||| ||||||||| ||| ||| | || || | |||||| | |||
Sbjct 2587 GAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCT-TCT 2529
Query 221896 G-GCGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATACCCGGTATAGAGCA 221951
| || ||| ||| ||| | |||| | ||| ||| ||| ||| |
Sbjct 2528 GAGCCTTCATGGTC---TTGCGT---CCCTTGCCCATCTGTTCGTACTTCTCATACAAGG 2475
Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011
||||||| || ||||| ||| ||| ||| || ||| ||| ||||| |||
Sbjct 2474 CCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAG 2415
Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071
|||||| ||| | | ||| |||| ||||||||| || || ||||| || || |||
Sbjct 2414 TCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAA 2355
Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131
|||| || | | || ||||||| |||| || || | ||||||||| || || |
Sbjct 2354 AGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGA 2295
Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191
| | ||| |||||||| ||||| || |||| ||| | || ||||| |||||||| ||||
Sbjct 2294 AGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCAC 2235
Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|||| || || | || |||||||| ||||| | || || | || ||||
Sbjct 2234 CCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGG 2175
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA---GGTTACTGGCAGACA 222308
| ||| |||||||| |||||| | || ||| | | ||| | || ||
Sbjct 2174 AGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAA---CATTCA 2118
Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368
||||||||||||||| || |||||||||||||| ||||||| ||||| ||| |
Sbjct 2117 GGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATAC 2058
Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428
|||| || || || ||||| | || | || || || || || | ||| | | | ||
Sbjct 2057 CCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGG 1998
Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488
|| ||||| || || |||||| |||||| || ||| | || ||||||| | ||
Sbjct 1997 TACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGT 1938
Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCTCATGT 222545
| || || | ||| | | | || ||| ||| || ||| | |||| | ||||
Sbjct 1937 AGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGA---TGCCAACGGCGACACGCATGA 1881
Query 222546 ACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602
||||| || ||||||| || | | || | |||| ||| ||||| ||| | |
Sbjct 1880 TCATGTGTTGCGGCCTCT-CAGCGATCTTGCCGTCAAGCT--TGAGGAGGTATGATCTCT 1824
Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGT 222662
||| || ||||| || ||||| | | || ||||| | | ||| || | ||| | ||
Sbjct 1823 CCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGT 1764
Query 222663 CCAGCTCCGACTTGTGC 222679
| ||||| |||||||
Sbjct 1763 CGAGCTCTTCCTTGTGC 1747
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 3286 GTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGG 3227
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|| | | |||||||||||||| |||||| | |||||||| || |||||||| || ||
Sbjct 3226 CTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGAC 3167
Query 221236 CAGCAGACTGTTGCG 221250
|||||| ||||||
Sbjct 3166 GAGCAGAGAGTTGCG 3152
>seq3410
Length=4507
Score = 150 bits (166), Expect = 3e-31
Identities = 327/493 (66%), Gaps = 13/493 (3%)
Strand=Plus/Minus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
||||| | |||||||| ||| ||| || | || | | |||| ||||| || ||
Sbjct 2205 TGGGCTCTCAAGTGGATTAACGATGAGAAATCTTCATTCGCCCAGCGTCTGGTCGCTTTC 2146
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|| || || ||||| ||||| ||||||||| | || ||| ||||||||||||||||| ||
Sbjct 2145 GCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCGTCCATCTTCTGGCTCAAGAAG 2086
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| ||||||||| ||| ||| ||||||||||||||| | || ||||| |||
Sbjct 2085 CGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGACTC 2026
Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACCTTCTCAAG 26071
|||| || || ||||||||||| ||| | ||| ||| | || || ||||
Sbjct 2025 CACACCGACTTCGCCTGCCTGCTGTACTC---CCA---TCTCAAGAACCGCCCCAGCAAG 1972
Query 26072 -AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130
|| | | | |||||| || || || |||||||| ||||||| |
Sbjct 1971 CAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGATCGAGCAGGAGTTCCTGACTGAA 1912
Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190
| ||||||||| || | |||| || ||||||||||
Sbjct 1911 GCCTTGCCTTGTGCCCTGCTTGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTC 1852
Query 26191 GTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248
|| ||||||| || ||| ||| || || || || |||||| | | ||||
Sbjct 1851 GTCGCCGACCGCCTTCTGGTTGC--TCTTGGCAACGACAAGGTCTACAAGTCTTCCAACC 1794
Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308
| |||||||| ||||| ||||| || ||| || ||||||||||||||||| ||| | |
Sbjct 1793 CCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTG 1734
Query 26309 TCGGCGACTATCA 26321
| | ||||| ||
Sbjct 1733 TTGCTGACTACCA 1721
Score = 89.7 bits (98), Expect = 1e-12
Identities = 161/233 (69%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| | ||| ||||| ||||| || |||||||||
Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565
Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593
| ||||| | | | |||| || | ||| | | || ||| || | || || |
Sbjct 2564 TCAAAGGATCTCCATGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 2505
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || ||||| ||||| || || |||||||| ||| ||| |
Sbjct 2504 CACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGAGCGC 2445
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | ||||| ||| ||||||| || || ||||| ||||||||
Sbjct 2444 TTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGAT 2392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928725965918400
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