Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2519 320 3e-82 seq3410 150 3e-31 >seq2519 Length=5298 Score = 320 bits (354), Expect = 3e-82 Identities = 887/1337 (66%), Gaps = 61/1337 (5%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCA-AGACTGCGTCAGGGC 221424 || ||||||| || ||| || || | | || ||| | ||| |||| || ||||| Sbjct 3045 CCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCT-GCACAGACATGGTGAGGGC 2987 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGGAGAAGTGA 221483 |||||||||||||||||| |||||| |||||||||| || | ||| |||||||| || Sbjct 2986 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCG-GGCTTCGGGAGACTCGA 2928 Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||||| || || | | || | ||||| || ||||| || |||| || ||||| | Sbjct 2927 AGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGC 2868 Query 221544 TGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 ||| | | |||| | ||| || ||| | ||||| ||| |||||||||||| | Sbjct 2867 GGTGGCGCATGTTACTGTTGCGA--GCCTCTTGAACGGGGTAATGGTTGACGTCGATGAT 2810 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 |||| ||||| || || ||| |||| ||||| || ||| | || | Sbjct 2809 TCTGTTCAGGTTGCGA------AC---AACAACCTGGGTCACCTCGTGGAGCTT---CTG 2762 Query 221662 CAACTCGCCG---CCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || ||| | || |||| | | || ||||||| | || || | |||||| Sbjct 2761 GAAGTCGTAGACACCCTCGTTGTAG---TCAACAAAAGTGGGAAGTGCGAGCGAGGCCAG 2705 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT--- 221775 ||| || || || |||||||| | |||| |||||||| || || ||||| Sbjct 2704 GTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGA 2645 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 ||||| ||||| || |||| || || || |||||| ||||| || |||||||| Sbjct 2644 GCTGCGA---ATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTA 2588 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||| ||||| ||||||||| ||| ||| | || || | |||||| | ||| Sbjct 2587 GAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCT-TCT 2529 Query 221896 G-GCGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATACCCGGTATAGAGCA 221951 | || ||| ||| ||| | |||| | ||| ||| ||| ||| | Sbjct 2528 GAGCCTTCATGGTC---TTGCGT---CCCTTGCCCATCTGTTCGTACTTCTCATACAAGG 2475 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 ||||||| || ||||| ||| ||| ||| || ||| ||| ||||| ||| Sbjct 2474 CCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAG 2415 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||||| ||| | | ||| |||| ||||||||| || || ||||| || || ||| Sbjct 2414 TCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAA 2355 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| || | | || ||||||| |||| || || | ||||||||| || || | Sbjct 2354 AGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGA 2295 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | ||| |||||||| ||||| || |||| ||| | || ||||| |||||||| |||| Sbjct 2294 AGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCAC 2235 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||| || || | || |||||||| ||||| | || || | || |||| Sbjct 2234 CCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGG 2175 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA---GGTTACTGGCAGACA 222308 | ||| |||||||| |||||| | || ||| | | ||| | || || Sbjct 2174 AGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAA---CATTCA 2118 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 ||||||||||||||| || |||||||||||||| ||||||| ||||| ||| | Sbjct 2117 GGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATAC 2058 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 |||| || || || ||||| | || | || || || || || | ||| | | | || Sbjct 2057 CCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGG 1998 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 || ||||| || || |||||| |||||| || ||| | || ||||||| | || Sbjct 1997 TACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGT 1938 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCTCATGT 222545 | || || | ||| | | | || ||| ||| || ||| | |||| | |||| Sbjct 1937 AGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGA---TGCCAACGGCGACACGCATGA 1881 Query 222546 ACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602 ||||| || ||||||| || | | || | |||| ||| ||||| ||| | | Sbjct 1880 TCATGTGTTGCGGCCTCT-CAGCGATCTTGCCGTCAAGCT--TGAGGAGGTATGATCTCT 1824 Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGT 222662 ||| || ||||| || ||||| | | || ||||| | | ||| || | ||| | || Sbjct 1823 CCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGT 1764 Query 222663 CCAGCTCCGACTTGTGC 222679 | ||||| ||||||| Sbjct 1763 CGAGCTCTTCCTTGTGC 1747 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 3286 GTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGG 3227 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | | |||||||||||||| |||||| | |||||||| || |||||||| || || Sbjct 3226 CTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGAC 3167 Query 221236 CAGCAGACTGTTGCG 221250 |||||| |||||| Sbjct 3166 GAGCAGAGAGTTGCG 3152 >seq3410 Length=4507 Score = 150 bits (166), Expect = 3e-31 Identities = 327/493 (66%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| | |||||||| ||| ||| || | || | | |||| ||||| || || Sbjct 2205 TGGGCTCTCAAGTGGATTAACGATGAGAAATCTTCATTCGCCCAGCGTCTGGTCGCTTTC 2146 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || || || ||||| ||||| ||||||||| | || ||| ||||||||||||||||| || Sbjct 2145 GCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCGTCCATCTTCTGGCTCAAGAAG 2086 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| ||| ||||||||||||||| | || ||||| ||| Sbjct 2085 CGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGACTC 2026 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACCTTCTCAAG 26071 |||| || || ||||||||||| ||| | ||| ||| | || || |||| Sbjct 2025 CACACCGACTTCGCCTGCCTGCTGTACTC---CCA---TCTCAAGAACCGCCCCAGCAAG 1972 Query 26072 -AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || | | | |||||| || || || |||||||| ||||||| | Sbjct 1971 CAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGATCGAGCAGGAGTTCCTGACTGAA 1912 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| || | |||| || |||||||||| Sbjct 1911 GCCTTGCCTTGTGCCCTGCTTGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTC 1852 Query 26191 GTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 || ||||||| || ||| ||| || || || || |||||| | | |||| Sbjct 1851 GTCGCCGACCGCCTTCTGGTTGC--TCTTGGCAACGACAAGGTCTACAAGTCTTCCAACC 1794 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| ||||| || ||| || ||||||||||||||||| ||| | | Sbjct 1793 CCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTG 1734 Query 26309 TCGGCGACTATCA 26321 | | ||||| || Sbjct 1733 TTGCTGACTACCA 1721 Score = 89.7 bits (98), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| ||||| ||||| || ||||||||| Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 | ||||| | | | |||| || | ||| | | || ||| || | || || | Sbjct 2564 TCAAAGGATCTCCATGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 2505 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| ||||| || || |||||||| ||| ||| | Sbjct 2504 CACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGAGCGC 2445 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | ||||| ||| ||||||| || || ||||| |||||||| Sbjct 2444 TTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGAT 2392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928725965918400