Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 214 2e-50
seq6468 104 3e-17
seq3410 91.5 2e-13
>seq2519
Length=5298
Score = 214 bits (236), Expect = 2e-50
Identities = 1185/1864 (64%), Gaps = 73/1864 (4%)
Strand=Plus/Plus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT--TCAACGGCTCGATGGCATCCTC 75202
||||| || |||||||| | |||| || | || || |||| ||| || |||| ||
Sbjct 1802 TACTTCGGCTTCAAAACCTTGGAGA-GATCATACCTCCTCAA--GCTTGACGGCAAGATC 1858
Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262
|| | || || ||||| ||||||| ||||| | |||||| || || ||| ||
Sbjct 1859 GCTGAGAGGCCGCAACACATGATCATGCGTGTCGCCGTTGGCATCTGGGGTGACGACGTT 1918
Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACAC 75320
|| ||| | || || ||| || ||||||| |||| | | ||| ||||| | |
Sbjct 1919 GAGCGCGTCATCGAAACCTACAACTTGATGTCCAGCAAGTTCT--TCACGCACGCCTCTC 1976
Query 75321 CAACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379
| || |||||||| |||||||| ||| || || ||| | ||| |||||||| ||| |
Sbjct 1977 CCACACTCTTCAACGCTGGTACCCCACAGGCC-CAGCTATCCTCCTGCTTCCTCGTCGAC 2035
Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCT 75437
| ||||| || || ||| | |||||||||| || || | | | | ||||| | ||||
Sbjct 2036 ATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCT 2093
Query 75438 CAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA 75497
| ||| ||| || ||||| || || | | || | | |||| | || |
Sbjct 2094 CCAAGATGGCCGGTGGTATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTCCTACA 2153
Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557
|| || || |||||| || |||| || | || |||||||| || || ||| ||
Sbjct 2154 TTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAACAACA 2213
Query 75558 CAGCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACT 75611
| || ||||| || | || | || ||||| | || || | || |||||
Sbjct 2214 CGGCTCGCTACGTTGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACC 2270
Query 75612 TGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACG 75671
| || || ||||| ||||| || | || ||| | || | || || || || | |
Sbjct 2271 TTGAGCCTTGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAAGG 2330
Query 75672 AAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGC 75731
| |||| || | | || |||||| |||| |||||||| || || |||||||||
Sbjct 2331 AGGAGGTCCGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGA 2390
Query 75732 GGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG 75791
| || ||| || || | ||| ||||| | || || | || || || | |||
Sbjct 2391 GAGTCGAGAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGCCG 2450
Query 75792 ACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA---GAG 75848
|| || ||||||||||| ||| | || ||||| ||| || ||| | ||
Sbjct 2451 ACTGCTACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAACAGATGGGCAAGGGAC 2510
Query 75849 CCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAG 75907
||| | | || | | | | || | | ||| | ||||| || | | ||||| |||
Sbjct 2511 GCAAGACCA-TGAA---GGCTCAGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAG 2566
Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967
||||| | || | ||||| ||||||||||| ||| ||||| ||||| |||||
Sbjct 2567 ACTGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAAC 2626
Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027
| || || || ||||| || || ||||| || || | |||||| | | ||
Sbjct 2627 CTTGGTACCATTCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGAC 2686
Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGAAGAG 76084
||| ||||| ||||| |||| || |||| ||||| | | ||| | | | |||
Sbjct 2687 GAGGTCGCTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGTTGACTACAACGAG 2746
Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144
| | | || | | || || || || | || || ||||| || ||
Sbjct 2747 GGTGTC---TACGACTTCCAGAAGCTCCACGAGGTGACCCAGGTTGTTGTTCGCAACCTG 2803
Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATG 76201
||| || |||| ||| || ||| |||||| ||| || ||| | ||| || |||
Sbjct 2804 AACAGAATCATCGACGTCAACCATTACCCCGTTCAAGAGGCT-CGCAACAGT--AACATG 2860
Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261
|| ||| | || ||||| | ||||| || ||||| || |||| ||| || | |
Sbjct 2861 CGCCACCGCCCCATTGGCCTCGGTGTGCAGGGTCTTGCCGATGC-----TTTCCTGGCTC 2915
Query 76262 TACGCAT-----TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCA 76316
| ||||| | || || |||||| || | || ||||| || ||||
Sbjct 2916 TTCGCATGCCCTTCGAGTCTCCCGAAGCCCGCGACCTCAACAAGAAGATCTTCGAGACCA 2975
Query 76317 TGTATCACGCATCCCTGGAGGCGAGT-TGTGAAT-TGGCTGAAGCCCAAGGTTCCTATGA 76374
| || ||||| |||| | || |||| | ||||| ||| | || | || |
Sbjct 2976 TCTACCACGCTGCCCTCAC--CATGTCTGTGCAGCTGGCTAAAGAGGAGGGCCCATACCA 3033
Query 76375 GACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGA 76434
||| | ||||| || || | ||||| || | ||||||| ||| |||||| || || |
Sbjct 3034 GACGTACGAGGGCTCGCCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGG-AATGTCA 3092
Query 76435 AACCAA-GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 76493
| || | | || |||||||| ||| ||||| | |||||| || | ||| | |
Sbjct 3093 AGCCTTCGGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCC 3152
Query 76494 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 76553
| ||| ||| | | || || ||||| || ||| ||| | || |||||||| || |
Sbjct 3153 GCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAACA 3212
Query 76554 ATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGT 76613
| || || ||||| || ||||| |||||||||||| | | | ||| || || ||||
Sbjct 3213 ACGAGTGTTTTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGAGT 3272
Query 76614 TTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGG 76673
| | |||||| || | || ||||| | || || || |||||| | |
Sbjct 3273 TCCAGGTCGTCAACCCTTGGCTTCTTAAGGACCTTGTCGACATGGGCCTATGGTCCGATG 3332
Query 76674 ATATGAAGGA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATC 76729
|||||| | | |||| | || | | ||||| ||||| || || | | |||
Sbjct 3333 CCATGAAGAACCGTATCATCGCCGAGAAC----GGTTCAATTCAGAACATTCCCAACATC 3388
Query 76730 CCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATT 76789
|| || ||||| ||| ||| || || ||||||||| | |||| ||
Sbjct 3389 CCCACAGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACTGTCGTT 3448
Query 76790 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCA 76847
| ||||| || ||||||||| ||||||||||| |||| ||| | ||| | ||
Sbjct 3449 CAGATGGCTGCCGATCGTGGTGCCTTCATTGATC--AGTCGCAGTCGCTCAATATTCACA 3506
Query 76848 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGC 76907
|| | ||| || ||| |||| || | ||||| | || ||||| | || |
Sbjct 3507 TGAAGGATCCCACTATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTC 3566
Query 76908 TCAAAACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCAGCC 76967
|||| || || ||||||||||| || || |||| || || |||||||||| |
Sbjct 3567 TCAAGACGGGCATGTACTATCTGCGTACACAGGCCGCTGCTGCGCCTATTCAGTTCACCG 3626
Query 76968 TTGA 76971
||||
Sbjct 3627 TTGA 3630
>seq6468
Length=11497
Score = 104 bits (114), Expect = 3e-17
Identities = 202/294 (69%), Gaps = 12/294 (4%)
Strand=Plus/Plus
Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666
|||||||||||| |||| || ||||| || || || | | || ||||| || | |
Sbjct 1485 TGTACTCTCATTCTCACCGAAGGTGACTCTGCCAAGAGTTTGGCTGTTGCCGGCCGTGCC 1544
Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTTCG 13725
| | | | |||| | ||| || ||||| ||||| ||||| ||| ||| || ||
Sbjct 1545 ATTCTCGACCCCGATCGCATCGGAGTCTTCCCCCTTCGTGGTAAGATGCT-GAACGTCCG 1603
Query 13726 GGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCT 13785
|||||||| | | ||| ||||| ||||||||| || | | ||||| || ||||
Sbjct 1604 TGACGCTTCAATCGACCAGATCACAAAAAACCAGGAAATCCAGAACATCAAGCAGTTCCT 1663
Query 13786 TGGTCTTCA--ACAAGGAAA---AGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGT 13840
|||||| | ||||| | | | || || || | |||| || ||||||| |
Sbjct 1664 TGGTCTGAAGCACAAGCAGACATACACCGACACGAAGAGTCTG-----CGGTATGGTCAT 1718
Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATC 13894
|| ||||| ||| | ||| ||| | || ||||||||||||||||||||| ||
Sbjct 1719 CTGATGATCATGGCCGATCAGGATCACGACGGTTCTCACATCAAGGGTCTCCTC 1772
>seq3410
Length=4507
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/218 (71%), Gaps = 10/218 (5%)
Strand=Plus/Minus
Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC----ACAAA 65060
|| || || |||||| || ||||| | ||||| | || ||| || || | |||
Sbjct 2235 ACAGTTCCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA 2176
Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120
||| || |||||| |||| || | || || || || |||||||||||||||
Sbjct 2175 -TCT---TCATTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAG 2120
Query 65121 CGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCT 65179
||| | ||| ||| | || | ||| | |||||||| ||||||||||| ||||| ||
Sbjct 2119 CGGTGCCTTC-GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCT 2061
Query 65180 TCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
|||| || || || || || || |||||||| ||||||
Sbjct 2060 TCTCCAACGAGCTCATCTCTCGTGATGAGGGACTCCAC 2023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596493276376800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |