Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2519 214 2e-50 seq6468 104 3e-17 seq3410 91.5 2e-13 >seq2519 Length=5298 Score = 214 bits (236), Expect = 2e-50 Identities = 1185/1864 (64%), Gaps = 73/1864 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT--TCAACGGCTCGATGGCATCCTC 75202 ||||| || |||||||| | |||| || | || || |||| ||| || |||| || Sbjct 1802 TACTTCGGCTTCAAAACCTTGGAGA-GATCATACCTCCTCAA--GCTTGACGGCAAGATC 1858 Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262 || | || || ||||| ||||||| ||||| | |||||| || || ||| || Sbjct 1859 GCTGAGAGGCCGCAACACATGATCATGCGTGTCGCCGTTGGCATCTGGGGTGACGACGTT 1918 Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACAC 75320 || ||| | || || ||| || ||||||| |||| | | ||| ||||| | | Sbjct 1919 GAGCGCGTCATCGAAACCTACAACTTGATGTCCAGCAAGTTCT--TCACGCACGCCTCTC 1976 Query 75321 CAACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379 | || |||||||| |||||||| ||| || || ||| | ||| |||||||| ||| | Sbjct 1977 CCACACTCTTCAACGCTGGTACCCCACAGGCC-CAGCTATCCTCCTGCTTCCTCGTCGAC 2035 Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCT 75437 | ||||| || || ||| | |||||||||| || || | | | | ||||| | |||| Sbjct 2036 ATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCT 2093 Query 75438 CAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA 75497 | ||| ||| || ||||| || || | | || | | |||| | || | Sbjct 2094 CCAAGATGGCCGGTGGTATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTCCTACA 2153 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || || || |||||| || |||| || | || |||||||| || || ||| || Sbjct 2154 TTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAACAACA 2213 Query 75558 CAGCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACT 75611 | || ||||| || | || | || ||||| | || || | || ||||| Sbjct 2214 CGGCTCGCTACGTTGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACC 2270 Query 75612 TGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACG 75671 | || || ||||| ||||| || | || ||| | || | || || || || | | Sbjct 2271 TTGAGCCTTGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAAGG 2330 Query 75672 AAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGC 75731 | |||| || | | || |||||| |||| |||||||| || || ||||||||| Sbjct 2331 AGGAGGTCCGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGA 2390 Query 75732 GGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG 75791 | || ||| || || | ||| ||||| | || || | || || || | ||| Sbjct 2391 GAGTCGAGAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGCCG 2450 Query 75792 ACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA---GAG 75848 || || ||||||||||| ||| | || ||||| ||| || ||| | || Sbjct 2451 ACTGCTACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAACAGATGGGCAAGGGAC 2510 Query 75849 CCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAG 75907 ||| | | || | | | | || | | ||| | ||||| || | | ||||| ||| Sbjct 2511 GCAAGACCA-TGAA---GGCTCAGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAG 2566 Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967 ||||| | || | ||||| ||||||||||| ||| ||||| ||||| ||||| Sbjct 2567 ACTGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAAC 2626 Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027 | || || || ||||| || || ||||| || || | |||||| | | || Sbjct 2627 CTTGGTACCATTCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGAC 2686 Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGAAGAG 76084 ||| ||||| ||||| |||| || |||| ||||| | | ||| | | | ||| Sbjct 2687 GAGGTCGCTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGTTGACTACAACGAG 2746 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | | | || | | || || || || | || || ||||| || || Sbjct 2747 GGTGTC---TACGACTTCCAGAAGCTCCACGAGGTGACCCAGGTTGTTGTTCGCAACCTG 2803 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATG 76201 ||| || |||| ||| || ||| |||||| ||| || ||| | ||| || ||| Sbjct 2804 AACAGAATCATCGACGTCAACCATTACCCCGTTCAAGAGGCT-CGCAACAGT--AACATG 2860 Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261 || ||| | || ||||| | ||||| || ||||| || |||| ||| || | | Sbjct 2861 CGCCACCGCCCCATTGGCCTCGGTGTGCAGGGTCTTGCCGATGC-----TTTCCTGGCTC 2915 Query 76262 TACGCAT-----TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCA 76316 | ||||| | || || |||||| || | || ||||| || |||| Sbjct 2916 TTCGCATGCCCTTCGAGTCTCCCGAAGCCCGCGACCTCAACAAGAAGATCTTCGAGACCA 2975 Query 76317 TGTATCACGCATCCCTGGAGGCGAGT-TGTGAAT-TGGCTGAAGCCCAAGGTTCCTATGA 76374 | || ||||| |||| | || |||| | ||||| ||| | || | || | Sbjct 2976 TCTACCACGCTGCCCTCAC--CATGTCTGTGCAGCTGGCTAAAGAGGAGGGCCCATACCA 3033 Query 76375 GACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGA 76434 ||| | ||||| || || | ||||| || | ||||||| ||| |||||| || || | Sbjct 3034 GACGTACGAGGGCTCGCCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGG-AATGTCA 3092 Query 76435 AACCAA-GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 76493 | || | | || |||||||| ||| ||||| | |||||| || | ||| | | Sbjct 3093 AGCCTTCGGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCC 3152 Query 76494 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 76553 | ||| ||| | | || || ||||| || ||| ||| | || |||||||| || | Sbjct 3153 GCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAACA 3212 Query 76554 ATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGT 76613 | || || ||||| || ||||| |||||||||||| | | | ||| || || |||| Sbjct 3213 ACGAGTGTTTTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGAGT 3272 Query 76614 TTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGG 76673 | | |||||| || | || ||||| | || || || |||||| | | Sbjct 3273 TCCAGGTCGTCAACCCTTGGCTTCTTAAGGACCTTGTCGACATGGGCCTATGGTCCGATG 3332 Query 76674 ATATGAAGGA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATC 76729 |||||| | | |||| | || | | ||||| ||||| || || | | ||| Sbjct 3333 CCATGAAGAACCGTATCATCGCCGAGAAC----GGTTCAATTCAGAACATTCCCAACATC 3388 Query 76730 CCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATT 76789 || || ||||| ||| ||| || || ||||||||| | |||| || Sbjct 3389 CCCACAGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACTGTCGTT 3448 Query 76790 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCA 76847 | ||||| || ||||||||| ||||||||||| |||| ||| | ||| | || Sbjct 3449 CAGATGGCTGCCGATCGTGGTGCCTTCATTGATC--AGTCGCAGTCGCTCAATATTCACA 3506 Query 76848 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGC 76907 || | ||| || ||| |||| || | ||||| | || ||||| | || | Sbjct 3507 TGAAGGATCCCACTATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTC 3566 Query 76908 TCAAAACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCAGCC 76967 |||| || || ||||||||||| || || |||| || || |||||||||| | Sbjct 3567 TCAAGACGGGCATGTACTATCTGCGTACACAGGCCGCTGCTGCGCCTATTCAGTTCACCG 3626 Query 76968 TTGA 76971 |||| Sbjct 3627 TTGA 3630 >seq6468 Length=11497 Score = 104 bits (114), Expect = 3e-17 Identities = 202/294 (69%), Gaps = 12/294 (4%) Strand=Plus/Plus Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666 |||||||||||| |||| || ||||| || || || | | || ||||| || | | Sbjct 1485 TGTACTCTCATTCTCACCGAAGGTGACTCTGCCAAGAGTTTGGCTGTTGCCGGCCGTGCC 1544 Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTTCG 13725 | | | | |||| | ||| || ||||| ||||| ||||| ||| ||| || || Sbjct 1545 ATTCTCGACCCCGATCGCATCGGAGTCTTCCCCCTTCGTGGTAAGATGCT-GAACGTCCG 1603 Query 13726 GGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCT 13785 |||||||| | | ||| ||||| ||||||||| || | | ||||| || |||| Sbjct 1604 TGACGCTTCAATCGACCAGATCACAAAAAACCAGGAAATCCAGAACATCAAGCAGTTCCT 1663 Query 13786 TGGTCTTCA--ACAAGGAAA---AGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGT 13840 |||||| | ||||| | | | || || || | |||| || ||||||| | Sbjct 1664 TGGTCTGAAGCACAAGCAGACATACACCGACACGAAGAGTCTG-----CGGTATGGTCAT 1718 Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATC 13894 || ||||| ||| | ||| ||| | || ||||||||||||||||||||| || Sbjct 1719 CTGATGATCATGGCCGATCAGGATCACGACGGTTCTCACATCAAGGGTCTCCTC 1772 >seq3410 Length=4507 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/218 (71%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC----ACAAA 65060 || || || |||||| || ||||| | ||||| | || ||| || || | ||| Sbjct 2235 ACAGTTCCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA 2176 Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 ||| || |||||| |||| || | || || || || ||||||||||||||| Sbjct 2175 -TCT---TCATTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAG 2120 Query 65121 CGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCT 65179 ||| | ||| ||| | || | ||| | |||||||| ||||||||||| ||||| || Sbjct 2119 CGGTGCCTTC-GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCT 2061 Query 65180 TCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||| || || || || || || |||||||| |||||| Sbjct 2060 TCTCCAACGAGCTCATCTCTCGTGATGAGGGACTCCAC 2023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596493276376800