Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3410 87.8 3e-12 >seq3410 Length=4507 Score = 87.8 bits (96), Expect = 3e-12 Identities = 190/284 (67%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || || || |||||||| | || || || | || || || ||| | ||||| Sbjct 2332 TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATG 2391 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 ||||| || | ||||| |||| ||||||||| || | |||| || | || Sbjct 2392 ATCTGGAAGCCGTAAAAGCATCTGGCCTCGGGAACCTGTACTTCGCCGCTGAAGCGCTCA 2451 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 |||| ||||| || || || || || | | ||||| || || | || | ||| Sbjct 2452 ACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCGAAGAAGGCGAGAATGTGCGAGATG 2511 Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTATATCTTTTGATAGATCA 18658 || | || |||| || |||| ||||| ||| |||| | ||| ||||| |||||| Sbjct 2512 AAGTACTTCTCATCCTCGTTGATCTTGTTGTTCCAGTCATGGAGATCCTTTGACAGATCA 2571 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 | ||| || | |||||||||||| | || |||| |||||||| Sbjct 2572 ATTTCCTCGGCTGTCCAAAAAGAGGCCTCAGCCTTCTTGTACAT 2615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731778366126000