Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 111 5e-19
seq386 98.7 3e-15
>seq2519
Length=5298
Score = 111 bits (122), Expect = 5e-19
Identities = 456/709 (64%), Gaps = 15/709 (2%)
Strand=Plus/Minus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | |||||| |||||||||||| || ||||| || | |||||||
Sbjct 2678 CGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCT 2619
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
|||| || | ||| ||||||||||| || ||| | ||| | || ||||| |||
Sbjct 2618 GGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCT 2559
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCT-GCCT 155804
| || || || || |||||| | | || || || |||| || || |||
Sbjct 2558 GGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGC-GTCCCTTGCCC 2500
Query 155805 TCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCA 155864
| || || ||| ||||| | | ||||| ||||| || || || ||
Sbjct 2499 ATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCC 2440
Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATA 155921
||||||| || |||||| | || | ||| | || || ||| | | || |||
Sbjct 2439 GGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACT---CTCTTCATG 2383
Query 155922 AATACATCACTCGCCCAAATAGCATAGAAA-AGGTCCCTTGCCTTTGACTCCTCATCGCC 155980
|| | ||| ||| | ||| ||||| ||||| | || |||||| | ||
Sbjct 2382 AAGAGATCGGGAATCCAGAGGGCA-AGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCC 2324
Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040
||||||||| || || || ||||| || | || | || ||||| || || ||
Sbjct 2323 GTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGAT 2264
Query 156041 AGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097
||||| ||| | | | || |||||||| || || || ||||| || || |||||
Sbjct 2263 GGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAA 2204
Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157
||||| |||||||| | || |||||||| || |||||||| ||| ||| | || ||
Sbjct 2203 GACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCC 2144
Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAG 156216
|| | |||| |||| || || || |||||||| | |||| || || || |
Sbjct 2143 AGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACC-GGCCATCTTGGAGATCATGG 2085
Query 156217 CGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGAT 156276
|||| ||| | || | | ||||| || || ||||| || | ||| | ||
Sbjct 2084 CGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGA 2025
Query 156277 AGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325
|||| || || || | |||| || ||||||||||| ||||| ||
Sbjct 2024 AGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGG 1976
>seq386
Length=9116
Score = 98.7 bits (108), Expect = 3e-15
Identities = 106/140 (76%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|| ||||||| | ||| ||||||||| | || ||||| |||||| | ||||||||||
Sbjct 7359 AGGATTTCTTTGAGACGAGGAACACCAAGCGTCACGTT---CTTGGAAGAAACACCAGCA 7415
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || ||||| || | || || | |||||||| ||| || ||||| ||
Sbjct 7416 AAATGGAAGGTGTTCAGCGTCATCTGCGTGGCAGGCTCACCGATAGACTGGGCCGCGATG 7475
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 7476 ACACCAACCATTTCACCAGG 7495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471624591819195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |