Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2519 111 5e-19 seq386 98.7 3e-15 >seq2519 Length=5298 Score = 111 bits (122), Expect = 5e-19 Identities = 456/709 (64%), Gaps = 15/709 (2%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | |||||| |||||||||||| || ||||| || | ||||||| Sbjct 2678 CGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCT 2619 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| ||||||||||| || ||| | ||| | || ||||| ||| Sbjct 2618 GGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCT 2559 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCT-GCCT 155804 | || || || || |||||| | | || || || |||| || || ||| Sbjct 2558 GGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGC-GTCCCTTGCCC 2500 Query 155805 TCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCA 155864 | || || ||| ||||| | | ||||| ||||| || || || || Sbjct 2499 ATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCC 2440 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATA 155921 ||||||| || |||||| | || | ||| | || || ||| | | || ||| Sbjct 2439 GGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACT---CTCTTCATG 2383 Query 155922 AATACATCACTCGCCCAAATAGCATAGAAA-AGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 || | ||| ||| | ||| ||||| ||||| | || |||||| | || Sbjct 2382 AAGAGATCGGGAATCCAGAGGGCA-AGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCC 2324 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||||||||| || || || ||||| || | || | || ||||| || || || Sbjct 2323 GTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGAT 2264 Query 156041 AGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 ||||| ||| | | | || |||||||| || || || ||||| || || ||||| Sbjct 2263 GGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAA 2204 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 ||||| |||||||| | || |||||||| || |||||||| ||| ||| | || || Sbjct 2203 GACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCC 2144 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAG 156216 || | |||| |||| || || || |||||||| | |||| || || || | Sbjct 2143 AGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACC-GGCCATCTTGGAGATCATGG 2085 Query 156217 CGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGAT 156276 |||| ||| | || | | ||||| || || ||||| || | ||| | || Sbjct 2084 CGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGA 2025 Query 156277 AGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 |||| || || || | |||| || ||||||||||| ||||| || Sbjct 2024 AGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGG 1976 >seq386 Length=9116 Score = 98.7 bits (108), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 || ||||||| | ||| ||||||||| | || ||||| |||||| | |||||||||| Sbjct 7359 AGGATTTCTTTGAGACGAGGAACACCAAGCGTCACGTT---CTTGGAAGAAACACCAGCA 7415 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | || || | |||||||| ||| || ||||| || Sbjct 7416 AAATGGAAGGTGTTCAGCGTCATCTGCGTGGCAGGCTCACCGATAGACTGGGCCGCGATG 7475 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 7476 ACACCAACCATTTCACCAGG 7495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471624591819195