Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3354 233 2e-55
seq2519 170 2e-36
seq2281 120 4e-21
seq538 120 4e-21
seq2414 118 1e-20
seq3410 113 6e-19
seq10189 98.7 1e-14
seq1577 87.8 2e-11
>seq3354
Length=4562
Score = 233 bits (258), Expect = 2e-55
Identities = 285/389 (73%), Gaps = 6/389 (2%)
Strand=Plus/Minus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | |||||| |||| |||| ||||| ||||| ||||| |
Sbjct 2408 GGCGAGTCCCACGGCAAGTCGGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 2349
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||| ||||| ||| || | || ||||| || |||||| || | |
Sbjct 2348 CTCACCGAGGCCGACATTCAGCCCCAGCTGAACCGCCGCCGTCCCGGCCAGAGCTCCATC 2289
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| |||||||| ||||| || |||||| |||||||| ||||| ||| |||| ||
Sbjct 2288 ACGACGCCGCGAAACGAAAAGGACCGCGTCGTCATCCAGAGCGGCACCGAGTTCGGCGTC 2229
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCC------CGTC 18333
|| |||||| | || ||||| | | || || |||||||| || | |
Sbjct 2228 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAATGAGGACCAGCGCCCGAAGGACTAC 2169
Query 18334 GACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| | | || |||| || | | || || |||||||||||||||| |||||| | |
Sbjct 2168 GGCAACTCGACCATGGACAGGTTCCCCCGTCCCTCACACGCCGACTGGACCTACCTCGAG 2109
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||||||| ||||||||||||| ||||| ||||| || || |||||||||||| ||
Sbjct 2108 AAGTACGGCGTCAAGGCGTCGTCCGGCGGCGGCCGCTCTTCCGCCCGCGAGACCATCGCT 2049
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||||||||||||||| ||||||||||
Sbjct 2048 CGCGTCGCCGCCGGCGCCCTCGCCGAGAA 2020
Score = 145 bits (160), Expect = 9e-29
Identities = 136/170 (80%), Gaps = 6/170 (4%)
Strand=Plus/Minus
Query 19035 AAGCGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA 19094
|||||| |||||||||||||||||||| || || ||||| |||||| || |
Sbjct 1793 AAGCGC---GAGGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAACCCCCCCTCG 1737
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
| |||||||||||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 1736 GCCCTCGGCGAGCCCTGCTTTGACAAGCTCGAGGCCCAGCTCGCCCACGCCATGCTCAGC 1677
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202
||||| ||||||||||| |||||||| ||| |||| || |||| ||||
Sbjct 1676 ATCCCCGCCACCAAGGGCTTCGAGATCGGC-TCGGGCTTCGGCGGCTGCG 1628
>seq2519
Length=5298
Score = 170 bits (188), Expect = 2e-36
Identities = 330/489 (67%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| |||||||| ||||||| ||| ||||| || ||||| || || | ||| |||||
Sbjct 2233 CTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGA 2174
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| |||||||| || | ||||| ||| | ||| || | ||| | | |||
Sbjct 2173 GGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCC 2114
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || |||||| ||||||||| | ||||| ||||| ||||| ||||| |||||
Sbjct 2113 GATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTC 2054
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| || || |||||||||| ||||| ||||| || || || | || | || ||
Sbjct 2053 GATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACC 1994
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || ||||| |||| | ||||| || ||||||
Sbjct 1993 AGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTAGGT 1934
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||||| || || || ||| | ||||||
Sbjct 1933 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATGCCAACGGCGAC 1889
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| || |||| ||| ||| |||| | |||| ||||| ||
Sbjct 1888 ACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGA 1829
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || ||| ||| ||| ||||| || || |||||||||| |||||
Sbjct 1828 TCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGC 1769
Query 1630545 GGCGTCGAG 1630553
| ||||||
Sbjct 1768 AGAGTCGAG 1760
Score = 104 bits (114), Expect = 3e-16
Identities = 136/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393
||||||| || || ||||| | || || |||||| ||||||||| |||| |
Sbjct 3287 GGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGG 3228
Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453
||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| |
Sbjct 3227 GCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGA 3168
Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512
|||| || |||||||| | |||||||| | || || || | ||| | ||||||||||
Sbjct 3167 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAGAGAGTCCCAGTCC 3109
Query 1627513 CAGCGG 1627518
||| ||
Sbjct 3108 CAGAGG 3103
Score = 89.7 bits (98), Expect = 6e-12
Identities = 265/415 (64%), Gaps = 2/415 (0%)
Strand=Plus/Minus
Query 1628169 GATCTCGGTGCACAGGTT-GGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227
|||||| ||||||||||| | | || | ||||| ||||||| ||||||| | |
Sbjct 2665 GATCTCAGTGCACAGGTTAGAGCTGCG-AATGGTACCAAGGTTCTTCTGGTTGCTCTTGC 2607
Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287
||||| |||| ||||||| ||||||| |||| ||| |||||| |||| ||| | | ||
Sbjct 2606 GGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGA 2547
Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNNN 1628347
| || |||||| || | || || | | || | ||||
Sbjct 2546 TAGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGCGTCCCTTGCCCATCTGTTCGTACT 2487
Query 1628348 NNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACG 1628407
||||| || |||||||||| ||| || ||| || ||| |
Sbjct 2486 TCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGG 2427
Query 1628408 GACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCC 1628467
| || | || | |||||| || || | | | ||| ||||| || |||
Sbjct 2426 GGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCC 2367
Query 1628468 ACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGT 1628527
| || || ||||||||| || || ||| ||||||||| ||||| ||||| || |
Sbjct 2366 AGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGAT 2307
Query 1628528 CGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582
| | |||||| | |||||||||||| ||||| |||||| ||||||||| ||
Sbjct 2306 CCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC 2252
>seq2281
Length=5547
Score = 120 bits (132), Expect = 4e-21
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||| ||||||||||| || ||||| |||| |||||| | || ||||||
Sbjct 260 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 319
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || ||||| || || ||||| || |||||||
Sbjct 320 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 368
>seq538
Length=8705
Score = 120 bits (132), Expect = 4e-21
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||| ||||||||||| || ||||| |||| |||||| | || ||||||
Sbjct 7340 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 7399
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || ||||| || || ||||| || |||||||
Sbjct 7400 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 7448
>seq2414
Length=5403
Score = 118 bits (130), Expect = 1e-20
Identities = 247/360 (69%), Gaps = 15/360 (4%)
Strand=Plus/Minus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||||||||||| | |||||||| || || |||| | | | ||||| |||||||||||||
Sbjct 2051 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCAGTGCCGTTCTTGA 1993
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||| | || | | ||| | || || | ||||||||| | |||| |||||| || |
Sbjct 1992 AGCCAACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTAC 1933
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA---AATAAGGGGCCACCAGA-GGA 1726867
| ||||| | ||||| | | | ||| || | | | |||| ||| ||
Sbjct 1932 GGGCGCCGATAGCGCCGACGGAGATGAAGTCGGCGAGGAACTGCGGGG-----AGATGGT 1878
Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926
| ||| | |||| ||| | |||| || | ||||| || ||| ||||| || || |
Sbjct 1877 GTCGAGCATCTCGCTGGCAATGGGC--AT-GCCGGCGGCGGTGAGGTCGCGGAAGAGCTG 1821
Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986
||| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 1820 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 1761
Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046
||||||||||| |||||||| ||||||||||| |||| ||||||||||||| |||||
Sbjct 1760 GAGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 1701
>seq3410
Length=4507
Score = 113 bits (124), Expect = 6e-19
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| ||| || |||||||||||||| | || |||||
Sbjct 1715 GCCTTCTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 1774
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| ||| || || | |
Sbjct 1775 TTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACC 1834
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| |||||||||||||| ||||| |||||||| ||| | | || ||||||||| |
Sbjct 1835 AGAAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGC 1894
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || |||| | || ||| ||||| | |||||||| ||| || |||||||||
Sbjct 1895 AGGGCACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATG 1954
Query 868931 AT 868932
||
Sbjct 1955 AT 1956
Score = 107 bits (118), Expect = 2e-17
Identities = 142/192 (74%), Gaps = 5/192 (3%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| || || ||| ||| | |||||| |||| |||||||||||||| || ||||||
Sbjct 2030 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTC 2089
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|||||||| ||||||| ||| ||| || ||| ||||| ||||| |||||||| ||
Sbjct 2090 TTGAGCCAGAAGATGGACGC-GAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 2148
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
||| || |||| ||| || || || ||| | ||| |||||||| | |||||
Sbjct 2149 AGCGACCAGACGCTGGGCGAA--TGAAGA-TTTCTCATCGTTAATCCACTTGAGAGCCCA 2205
Query 869359 GTCGGCCTTTTT 869370
||||||||||||
Sbjct 2206 GTCGGCCTTTTT 2217
>seq10189
Length=9705
Score = 98.7 bits (108), Expect = 1e-14
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||| ||||| ||||| ||||||| ||| |||| | || |||||| | |
Sbjct 3039 TCGATGTCGTCCGCAATCGCATCAAGGGTTTTGCCCAGAAGAAGGTCACCCTGCCCCAGG 3098
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| || |||||| | | ||||| || ||||||||| | | || || | ||||||||||
Sbjct 3099 GCCGGCACAAGCTCGTGATCCTAGATGAGGCCGACAGTATGACCTCAGGCGCCCAGCAGG 3158
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
|||| || || ||||| | || |||||||||||||||| ||| | || || ||
Sbjct 3159 CCCTCCGCCGAACGATGGAGATTTACTCCAACACGACGCGCTTCGCCTTCGCCTGTAATC 3218
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236
||| | | |||||||| | || ||| || ||||||||||| ||
Sbjct 3219 AGTCCAACAAGATCATCGAGCCACTGCAATCGCGATGCGCCATTCTCCG 3267
>seq1577
Length=6503
Score = 87.8 bits (96), Expect = 2e-11
Identities = 97/128 (76%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 1572461 TCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTGG---TCGGCGTCGGTG 1572517
|||| || | |||||||| ||| ||||||| | |||| | | ||||||||||
Sbjct 1916 TCGACGACGAGCTGGGCGACGCGG---TCGCCCTCGGCAACTTCGAAATCGGCGTCGGCA 1972
Query 1572518 TGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCG 1572577
||||||||||| | ||| ||||||||||| |||||||| |||||||| || |||||
Sbjct 1973 TGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCGGCGTCGATGACACCGGCGCCC 2032
Query 1572578 ACGTCGAT 1572585
||||||
Sbjct 2033 GTGTCGAT 2040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106299267969495
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