Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3354 233 2e-55 seq2519 170 2e-36 seq2281 120 4e-21 seq538 120 4e-21 seq2414 118 1e-20 seq3410 113 6e-19 seq10189 98.7 1e-14 seq1577 87.8 2e-11 >seq3354 Length=4562 Score = 233 bits (258), Expect = 2e-55 Identities = 285/389 (73%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | |||||| |||| |||| ||||| ||||| ||||| | Sbjct 2408 GGCGAGTCCCACGGCAAGTCGGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 2349 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||| ||||| ||| || | || ||||| || |||||| || | | Sbjct 2348 CTCACCGAGGCCGACATTCAGCCCCAGCTGAACCGCCGCCGTCCCGGCCAGAGCTCCATC 2289 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | |||||||| ||||| || |||||| |||||||| ||||| ||| |||| || Sbjct 2288 ACGACGCCGCGAAACGAAAAGGACCGCGTCGTCATCCAGAGCGGCACCGAGTTCGGCGTC 2229 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCC------CGTC 18333 || |||||| | || ||||| | | || || |||||||| || | | Sbjct 2228 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAATGAGGACCAGCGCCCGAAGGACTAC 2169 Query 18334 GACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | | | || |||| || | | || || |||||||||||||||| |||||| | | Sbjct 2168 GGCAACTCGACCATGGACAGGTTCCCCCGTCCCTCACACGCCGACTGGACCTACCTCGAG 2109 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||||||| ||||||||||||| ||||| ||||| || || |||||||||||| || Sbjct 2108 AAGTACGGCGTCAAGGCGTCGTCCGGCGGCGGCCGCTCTTCCGCCCGCGAGACCATCGCT 2049 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||||||||||||||| |||||||||| Sbjct 2048 CGCGTCGCCGCCGGCGCCCTCGCCGAGAA 2020 Score = 145 bits (160), Expect = 9e-29 Identities = 136/170 (80%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 19035 AAGCGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA 19094 |||||| |||||||||||||||||||| || || ||||| |||||| || | Sbjct 1793 AAGCGC---GAGGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAACCCCCCCTCG 1737 Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 | |||||||||||| |||||||||||| |||||||| |||||||||||||||||| Sbjct 1736 GCCCTCGGCGAGCCCTGCTTTGACAAGCTCGAGGCCCAGCTCGCCCACGCCATGCTCAGC 1677 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202 ||||| ||||||||||| |||||||| ||| |||| || |||| |||| Sbjct 1676 ATCCCCGCCACCAAGGGCTTCGAGATCGGC-TCGGGCTTCGGCGGCTGCG 1628 >seq2519 Length=5298 Score = 170 bits (188), Expect = 2e-36 Identities = 330/489 (67%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| ||||||| ||| ||||| || ||||| || || | ||| ||||| Sbjct 2233 CTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGA 2174 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || |||||||| || | ||||| ||| | ||| || | ||| | | ||| Sbjct 2173 GGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCC 2114 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || |||||| ||||||||| | ||||| ||||| ||||| ||||| ||||| Sbjct 2113 GATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTC 2054 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| || || |||||||||| ||||| ||||| || || || | || | || || Sbjct 2053 GATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACC 1994 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || ||||| |||| | ||||| || |||||| Sbjct 1993 AGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTAGGT 1934 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||||| || || || ||| | |||||| Sbjct 1933 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATGCCAACGGCGAC 1889 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| || |||| ||| ||| |||| | |||| ||||| || Sbjct 1888 ACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGA 1829 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || ||| ||| ||| ||||| || || |||||||||| ||||| Sbjct 1828 TCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGC 1769 Query 1630545 GGCGTCGAG 1630553 | |||||| Sbjct 1768 AGAGTCGAG 1760 Score = 104 bits (114), Expect = 3e-16 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || ||||| | || || |||||| ||||||||| |||| | Sbjct 3287 GGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGG 3228 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| | Sbjct 3227 GCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGA 3168 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512 |||| || |||||||| | |||||||| | || || || | ||| | |||||||||| Sbjct 3167 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAGAGAGTCCCAGTCC 3109 Query 1627513 CAGCGG 1627518 ||| || Sbjct 3108 CAGAGG 3103 Score = 89.7 bits (98), Expect = 6e-12 Identities = 265/415 (64%), Gaps = 2/415 (0%) Strand=Plus/Minus Query 1628169 GATCTCGGTGCACAGGTT-GGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||| ||||||||||| | | || | ||||| ||||||| ||||||| | | Sbjct 2665 GATCTCAGTGCACAGGTTAGAGCTGCG-AATGGTACCAAGGTTCTTCTGGTTGCTCTTGC 2607 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 ||||| |||| ||||||| ||||||| |||| ||| |||||| |||| ||| | | || Sbjct 2606 GGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGA 2547 Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNNN 1628347 | || |||||| || | || || | | || | |||| Sbjct 2546 TAGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGCGTCCCTTGCCCATCTGTTCGTACT 2487 Query 1628348 NNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACG 1628407 ||||| || |||||||||| ||| || ||| || ||| | Sbjct 2486 TCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGG 2427 Query 1628408 GACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCC 1628467 | || | || | |||||| || || | | | ||| ||||| || ||| Sbjct 2426 GGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCC 2367 Query 1628468 ACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGT 1628527 | || || ||||||||| || || ||| ||||||||| ||||| ||||| || | Sbjct 2366 AGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGAT 2307 Query 1628528 CGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 | | |||||| | |||||||||||| ||||| |||||| ||||||||| || Sbjct 2306 CCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC 2252 >seq2281 Length=5547 Score = 120 bits (132), Expect = 4e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||| ||||||||||| || ||||| |||| |||||| | || |||||| Sbjct 260 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 319 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || ||||| || || ||||| || ||||||| Sbjct 320 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 368 >seq538 Length=8705 Score = 120 bits (132), Expect = 4e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||| ||||||||||| || ||||| |||| |||||| | || |||||| Sbjct 7340 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 7399 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || ||||| || || ||||| || ||||||| Sbjct 7400 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 7448 >seq2414 Length=5403 Score = 118 bits (130), Expect = 1e-20 Identities = 247/360 (69%), Gaps = 15/360 (4%) Strand=Plus/Minus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || |||| | | | ||||| ||||||||||||| Sbjct 2051 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCAGTGCCGTTCTTGA 1993 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||| | || | | ||| | || || | ||||||||| | |||| |||||| || | Sbjct 1992 AGCCAACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTAC 1933 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA---AATAAGGGGCCACCAGA-GGA 1726867 | ||||| | ||||| | | | ||| || | | | |||| ||| || Sbjct 1932 GGGCGCCGATAGCGCCGACGGAGATGAAGTCGGCGAGGAACTGCGGGG-----AGATGGT 1878 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | |||| ||| | |||| || | ||||| || ||| ||||| || || | Sbjct 1877 GTCGAGCATCTCGCTGGCAATGGGC--AT-GCCGGCGGCGGTGAGGTCGCGGAAGAGCTG 1821 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| ||| |||||| || Sbjct 1820 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 1761 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||| Sbjct 1760 GAGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 1701 >seq3410 Length=4507 Score = 113 bits (124), Expect = 6e-19 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| ||| || |||||||||||||| | || ||||| Sbjct 1715 GCCTTCTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 1774 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| || || | | Sbjct 1775 TTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACC 1834 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || |||||||||||||| ||||| |||||||| ||| | | || ||||||||| | Sbjct 1835 AGAAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGC 1894 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||| | || ||| ||||| | |||||||| ||| || ||||||||| Sbjct 1895 AGGGCACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATG 1954 Query 868931 AT 868932 || Sbjct 1955 AT 1956 Score = 107 bits (118), Expect = 2e-17 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || || ||| ||| | |||||| |||| |||||||||||||| || |||||| Sbjct 2030 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTC 2089 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||||| ||| ||| || ||| ||||| ||||| |||||||| || Sbjct 2090 TTGAGCCAGAAGATGGACGC-GAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 2148 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || |||| ||| || || || ||| | ||| |||||||| | ||||| Sbjct 2149 AGCGACCAGACGCTGGGCGAA--TGAAGA-TTTCTCATCGTTAATCCACTTGAGAGCCCA 2205 Query 869359 GTCGGCCTTTTT 869370 |||||||||||| Sbjct 2206 GTCGGCCTTTTT 2217 >seq10189 Length=9705 Score = 98.7 bits (108), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||| ||||| ||||| ||||||| ||| |||| | || |||||| | | Sbjct 3039 TCGATGTCGTCCGCAATCGCATCAAGGGTTTTGCCCAGAAGAAGGTCACCCTGCCCCAGG 3098 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | || |||||| | | ||||| || ||||||||| | | || || | |||||||||| Sbjct 3099 GCCGGCACAAGCTCGTGATCCTAGATGAGGCCGACAGTATGACCTCAGGCGCCCAGCAGG 3158 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 |||| || || ||||| | || |||||||||||||||| ||| | || || || Sbjct 3159 CCCTCCGCCGAACGATGGAGATTTACTCCAACACGACGCGCTTCGCCTTCGCCTGTAATC 3218 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 ||| | | |||||||| | || ||| || ||||||||||| || Sbjct 3219 AGTCCAACAAGATCATCGAGCCACTGCAATCGCGATGCGCCATTCTCCG 3267 >seq1577 Length=6503 Score = 87.8 bits (96), Expect = 2e-11 Identities = 97/128 (76%), Gaps = 6/128 (5%) Strand=Plus/Plus Query 1572461 TCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTGG---TCGGCGTCGGTG 1572517 |||| || | |||||||| ||| ||||||| | |||| | | |||||||||| Sbjct 1916 TCGACGACGAGCTGGGCGACGCGG---TCGCCCTCGGCAACTTCGAAATCGGCGTCGGCA 1972 Query 1572518 TGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCG 1572577 ||||||||||| | ||| ||||||||||| |||||||| |||||||| || ||||| Sbjct 1973 TGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCGGCGTCGATGACACCGGCGCCC 2032 Query 1572578 ACGTCGAT 1572585 |||||| Sbjct 2033 GTGTCGAT 2040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106299267969495