Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2519 120 3e-22 seq7566 111 1e-19 seq1773 84.2 2e-11 seq1878 82.4 7e-11 >seq2519 Length=5298 Score = 120 bits (132), Expect = 3e-22 Identities = 427/660 (65%), Gaps = 28/660 (4%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGA-TCACGA-ATATGTCGCGGTATTGTTGCAATATTTT 138415 || ||||| ||||||||||| ||| | || | ||| | | | ||| | ||| || | Sbjct 3429 ATTTCCCAAACGGTCTTGTACAGAGCCTTGACCTCTGTGGGGATGTTG--GGAATGTTCT 3372 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 |||| ||||| | || ||||| || || ||||| ||||| | || || | Sbjct 3371 GAATTGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCATAGGCCCATGT 3312 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | ||| || | || | ||| | |||||| || || || || | || || | Sbjct 3311 CGACAAGGTCCTTAAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGC 3252 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | ||| ||||| |||| | |||||||| | |||||||| |||| ||||| | | Sbjct 3251 GCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAG 3192 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 || | || ||||||||| ||| || | ||||| || || | |||||| ||||||| Sbjct 3191 TGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT 3132 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| || || ||||||||| | || ||| || |||||||| || |||| Sbjct 3131 GCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGCTTGACATTCCACATGTCATACT 3072 Query 138716 GTAACATTCCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771 | | || ||| | || ||| ||| ||||||| | |||| || |||| Sbjct 3071 GAAGGATGCCCTGGGAGACAGGCG----AGCCCTCGTACGTCTGGTATGGGCCCTCCTCT 3016 Query 138772 TGCGCCAACTCGTTGCTC-GCC---TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 | |||| | ||| | | | ||| ||| | | ||| || || ||| |||| Sbjct 3015 TTAGCCA----GCTGCACAGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTT 2960 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTC 138887 || ||||| ||||| |||| |||| | |||||||| || | ||| || || Sbjct 2959 CTTGTTGAGGTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATC 2900 Query 138888 GGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-- 138945 ||| || || ||||| || | || | ||||| ||||||| || || ||||| Sbjct 2899 GGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCA----TGTTACTGTTGCGAG 2844 Query 138946 --GCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003 ||| | || |||| ||| || ||||||||| |||| | || || || || |||| Sbjct 2843 CCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCT 2784 >seq7566 Length=2327 Score = 111 bits (122), Expect = 1e-19 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| ||||| || || || || || | || Sbjct 1237 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCC 1296 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 1297 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCAG 1356 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||||| ||||| | | | | || || || ||| Sbjct 1357 CAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 1416 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| |||| || || Sbjct 1417 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1463 >seq1773 Length=6176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| || || || || || | ||||| | || | Sbjct 5167 AAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATCGACAAT 5226 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || ||||| || || || |||||||| Sbjct 5227 GTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTGATCTTY 5286 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||| || ||||| ||||| | | | | || || || |||||||| |||| Sbjct 5287 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAGG 5341 >seq1878 Length=6026 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || |||||| | || || || | | Sbjct 5932 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATTACGTTGGAGGTGGAGTCTTCG 5873 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || |||||||| || Sbjct 5872 GACACGATCGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 5813 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || || || ||||| | | || || || ||| Sbjct 5812 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACACTGAGTGACTACAAC 5753 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | || | || |||| || ||| Sbjct 5752 ATCCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGC 5705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449840041225800