Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 120 3e-22
seq7566 111 1e-19
seq1773 84.2 2e-11
seq1878 82.4 7e-11
>seq2519
Length=5298
Score = 120 bits (132), Expect = 3e-22
Identities = 427/660 (65%), Gaps = 28/660 (4%)
Strand=Plus/Minus
Query 138358 ATCTCCCACACGGTCTTGTATAGA-TCACGA-ATATGTCGCGGTATTGTTGCAATATTTT 138415
|| ||||| ||||||||||| ||| | || | ||| | | | ||| | ||| || |
Sbjct 3429 ATTTCCCAAACGGTCTTGTACAGAGCCTTGACCTCTGTGGGGATGTTG--GGAATGTTCT 3372
Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475
|||| ||||| | || ||||| || || ||||| ||||| | || || |
Sbjct 3371 GAATTGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCATAGGCCCATGT 3312
Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535
|| | ||| || | || | ||| | |||||| || || || || | || || |
Sbjct 3311 CGACAAGGTCCTTAAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGC 3252
Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595
| ||| ||||| |||| | |||||||| | |||||||| |||| ||||| | |
Sbjct 3251 GCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAG 3192
Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655
|| | || ||||||||| ||| || | ||||| || || | |||||| |||||||
Sbjct 3191 TGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT 3132
Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715
| ||||| || || ||||||||| | || ||| || |||||||| || ||||
Sbjct 3131 GCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGCTTGACATTCCACATGTCATACT 3072
Query 138716 GTAACATTCCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771
| | || ||| | || ||| ||| ||||||| | |||| || ||||
Sbjct 3071 GAAGGATGCCCTGGGAGACAGGCG----AGCCCTCGTACGTCTGGTATGGGCCCTCCTCT 3016
Query 138772 TGCGCCAACTCGTTGCTC-GCC---TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827
| |||| | ||| | | | ||| ||| | | ||| || || ||| ||||
Sbjct 3015 TTAGCCA----GCTGCACAGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTT 2960
Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTC 138887
|| ||||| ||||| |||| |||| | |||||||| || | ||| || ||
Sbjct 2959 CTTGTTGAGGTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATC 2900
Query 138888 GGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-- 138945
||| || || ||||| || | || | ||||| ||||||| || || |||||
Sbjct 2899 GGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCA----TGTTACTGTTGCGAG 2844
Query 138946 --GCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003
||| | || |||| ||| || ||||||||| |||| | || || || || ||||
Sbjct 2843 CCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCT 2784
>seq7566
Length=2327
Score = 111 bits (122), Expect = 1e-19
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || ||||| ||||| || || || || || | ||
Sbjct 1237 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCC 1296
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 1297 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCAG 1356
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| || || || ||||| ||||| | | | | || || || |||
Sbjct 1357 CAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 1416
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| |||| |||| |||| || ||
Sbjct 1417 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1463
>seq1773
Length=6176
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || ||||| || ||||| || || || || || | ||||| | || |
Sbjct 5167 AAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATCGACAAT 5226
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || || || || ||||| || || || ||||||||
Sbjct 5227 GTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTGATCTTY 5286
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
||||| || ||||| ||||| | | | | || || || |||||||| ||||
Sbjct 5287 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAGG 5341
>seq1878
Length=6026
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | ||||| || || |||||| | || || || | |
Sbjct 5932 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATTACGTTGGAGGTGGAGTCTTCG 5873
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| || || || || || |||||||| ||
Sbjct 5872 GACACGATCGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 5813
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||||||||||| || || || || || ||||| | | || || || |||
Sbjct 5812 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACACTGAGTGACTACAAC 5753
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||| ||||| || ||| | || | || |||| || |||
Sbjct 5752 ATCCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGC 5705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449840041225800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |