Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8289 107 2e-18 >seq8289 Length=2061 Score = 107 bits (118), Expect = 2e-18 Identities = 200/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 || ||||| ||||| | || | | || | || |||||| |||||| || || || Sbjct 277 TCGGTCTCAGGGTTCTTGCACTTCTTGCAAAGAACGAACTTGTTGATGAAGCCGTCGAGG 336 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 |||| || | ||| ||| | |||||||||||||| ||| | || |||| | Sbjct 337 TGGTCTTGCAGCTTGGCGGCATTGTGGGAGCCGTTGATGATCCAGCGGTCGTCGGCGGGG 396 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 ||||| | || || || || |||||| | || |||||||| | || | | ||| Sbjct 397 TCGACGTTGGTCTGGGCACCGAGCTCGAAGCCAAAGTACTTGATGACATAGGCGCCGGGA 456 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 || | || | || |||| | || ||||||| ||| |||||||||||||||||| Sbjct 457 CGGGCGAGGGACTGAGCGACACTGCTCAGATTGACGACGACGGTCTTGATGCCGTTGCCC 516 Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || || |||| ||||| | ||| | ||| ||||| || ||||| |||||| Sbjct 517 TTGCCCTCGATCTTGGTGACGATCTTCTCCATCTTGTAACGATAGAAGGCGTCC 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412790102525855