Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2281 120 5e-21 seq538 120 5e-21 seq10189 111 2e-18 seq3410 100 5e-15 seq2519 100 5e-15 seq1577 93.3 7e-13 >seq2281 Length=5547 Score = 120 bits (132), Expect = 5e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||| |||||||||||||||||||| | || |||||||| || |||||| Sbjct 260 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 319 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| || || ||||| || ||||||| Sbjct 320 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 368 >seq538 Length=8705 Score = 120 bits (132), Expect = 5e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||| |||||||||||||||||||| | || |||||||| || |||||| Sbjct 7340 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 7399 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| || || ||||| || ||||||| Sbjct 7400 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 7448 >seq10189 Length=9705 Score = 111 bits (122), Expect = 2e-18 Identities = 172/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 |||||| | ||||| |||||| | | ||||| |||||||||||| | | || || | Sbjct 3088 CCTGCCCCAGGGCCGGCACAAGCTCGTGATCCTAGATGAGGCCGACAGTATGACCTCAGG 3147 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 ||||||||||||||||| || ||||| | ||| ||||||||||||| || || | Sbjct 3148 CGCCCAGCAGGCCCTCCGCCGAACGATGGAGATTTACTCCAACACGACGCGCTTCGCCTT 3207 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 ||||| || ||| | | ||||||| | || || || |||||||| | || Sbjct 3208 CGCCTGTAATCAGTCCAACAAGATCATCGAGCCACTGCAATCGCGATGCGCCATTCTCCG 3267 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 | || || ||||| |||| ||| | | | ||||||| |||| || || ||||| Sbjct 3268 ATACGCCCGGCTCACGGACGAGCAGGTGGTCAAGCGTCTGATGCAGATCATTGAGGCCGA 3327 Query 2019434 AAAGGT 2019439 ||||| Sbjct 3328 GAAGGT 3333 >seq3410 Length=4507 Score = 100 bits (110), Expect = 5e-15 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || | || ||| ||| || |||||||||||||| | | Sbjct 1707 TGACACCGGCCTTCTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 1766 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | | |||| ||| ||| || | Sbjct 1767 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAA 1826 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || ||||||||||||||||| ||||||||||| ||| | | || ||||| Sbjct 1827 GAGCAACCAGAAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCA 1886 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || |||| | || | | ||||| | |||||||| ||| || | Sbjct 1887 TGCCAAGCAGGGCACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCAT 1946 Query 794131 CGATGATGAT 794140 ||| |||||| Sbjct 1947 CGACGATGAT 1956 Score = 96.9 bits (106), Expect = 5e-14 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| || | || | || ||||||| |||||||||||| Sbjct 2293 GTGTCAATGGCGTTGAAGAGGTACGTGCG-CTGAGCAGGCTCCTTGATGTAGGTGTCGAT 2351 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || ||||||||||| ||||| ||||| || || |||||||||||| |||||||| Sbjct 2352 GAGCAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCA 2411 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || ||| ||| | |||||| ||| |||||||||||||| || |||||| Sbjct 2030 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTC 2089 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||| || ||| ||||| ||||| |||||||| || Sbjct 2090 TTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAAA 2149 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || |||| ||| || || | ||| | ||| |||||||| | ||||| Sbjct 2150 GCGACCAGACGCTGGGCGAA--TGAAGA-TTTCTCATCGTTAATCCACTTGAGAGCCCAG 2206 Query 794521 TCTGCCTTTTT 794531 || |||||||| Sbjct 2207 TCGGCCTTTTT 2217 >seq2519 Length=5298 Score = 100 bits (110), Expect = 5e-15 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 ||||||| || || ||||| | || || |||||| ||||||||| ||| | Sbjct 3287 GGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGG 3228 Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722 ||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| | Sbjct 3227 GCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGA 3168 Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782 ||||||| |||||||| | |||| ||| | | || || ||| | ||||||||||| Sbjct 3167 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCC 3108 Query 2069783 AGCGG 2069787 || || Sbjct 3107 AGAGG 3103 Score = 91.5 bits (100), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 2071770 GGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAG 2071829 ||| ||||| | |||||| ||| ||| || ||| || ||| ||||| | || Sbjct 2476 GGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAG 2417 Query 2071830 CGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTA 2071889 | |||||| ||| || | || | ||| || || ||| |||| ||| | Sbjct 2416 AGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAG 2357 Query 2071890 AAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTC 2071949 |||||| || || || ||| ||||||||| ||||| ||||| ||| || | |||| Sbjct 2356 AAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTC 2297 Query 2071950 GACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 || || |||||||||||| ||||| |||||| ||||||||| || Sbjct 2296 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC 2252 >seq1577 Length=6503 Score = 93.3 bits (102), Expect = 7e-13 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 2017463 GCCCGTCGAGCCAAAGCCGCCGGCACCGCGCTCGGTCTCGTCCAACGAATCGACCCACGC 2017522 |||||| ||| |||||||| || |||||| || |||| || | | | ||| | Sbjct 1834 GCCCGTGCTGCCGAAGCCGCCAGCGCCGCGCACGCTCTCTTCGAGCTCCGCAACCTCGAC 1893 Query 2017523 GGGCTCGGGTTGGGCAATCTTT--TCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCC 2017580 | |||||| || ||| | |||| || | |||||||| || |||| || | Sbjct 1894 GATCTCGGG--GGTGAATATGCGCTCGACGACGAGCTGGGCGACGCGGTCGCCCTCGGCA 1951 Query 2017581 ACGACGTGATCGGCGTCGGTATGGTTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCG 2017640 || || ||||||||||| |||||| ||||| | ||| |||||||| || |||||| Sbjct 1952 ACTTCGAAATCGGCGTCGGCATGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCG 2011 Query 2017641 GCATCGATGACGCCGGCGCCGACGTCGAT 2017669 || |||||||| |||||||| |||||| Sbjct 2012 GCGTCGATGACACCGGCGCCCGTGTCGAT 2040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915157656368165