Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2281 120 5e-21
seq538 120 5e-21
seq10189 111 2e-18
seq3410 100 5e-15
seq2519 100 5e-15
seq1577 93.3 7e-13
>seq2281
Length=5547
Score = 120 bits (132), Expect = 5e-21
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||| |||||||||||||||||||| | || |||||||| || ||||||
Sbjct 260 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 319
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| || ||||| || || ||||| || |||||||
Sbjct 320 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 368
>seq538
Length=8705
Score = 120 bits (132), Expect = 5e-21
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||| |||||||||||||||||||| | || |||||||| || ||||||
Sbjct 7340 GCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACGGTCGCCAAC 7399
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| || ||||| || || ||||| || |||||||
Sbjct 7400 ATGATCAAGGGCAAGTCCCCGGAGGAAATTCGTAAGACATTCAACATCA 7448
>seq10189
Length=9705
Score = 111 bits (122), Expect = 2e-18
Identities = 172/246 (70%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253
|||||| | ||||| |||||| | | ||||| |||||||||||| | | || || |
Sbjct 3088 CCTGCCCCAGGGCCGGCACAAGCTCGTGATCCTAGATGAGGCCGACAGTATGACCTCAGG 3147
Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313
||||||||||||||||| || ||||| | ||| ||||||||||||| || || |
Sbjct 3148 CGCCCAGCAGGCCCTCCGCCGAACGATGGAGATTTACTCCAACACGACGCGCTTCGCCTT 3207
Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373
||||| || ||| | | ||||||| | || || || |||||||| | ||
Sbjct 3208 CGCCTGTAATCAGTCCAACAAGATCATCGAGCCACTGCAATCGCGATGCGCCATTCTCCG 3267
Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433
| || || ||||| |||| ||| | | | ||||||| |||| || || |||||
Sbjct 3268 ATACGCCCGGCTCACGGACGAGCAGGTGGTCAAGCGTCTGATGCAGATCATTGAGGCCGA 3327
Query 2019434 AAAGGT 2019439
|||||
Sbjct 3328 GAAGGT 3333
>seq3410
Length=4507
Score = 100 bits (110), Expect = 5e-15
Identities = 172/250 (69%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || | || ||| ||| || |||||||||||||| | |
Sbjct 1707 TGACACCGGCCTTCTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 1766
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||||| | | |||| ||| ||| || |
Sbjct 1767 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAA 1826
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | || ||||||||||||||||| ||||||||||| ||| | | || |||||
Sbjct 1827 GAGCAACCAGAAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCA 1886
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || |||| | || | | ||||| | |||||||| ||| || |
Sbjct 1887 TGCCAAGCAGGGCACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCAT 1946
Query 794131 CGATGATGAT 794140
||| ||||||
Sbjct 1947 CGACGATGAT 1956
Score = 96.9 bits (106), Expect = 5e-14
Identities = 95/120 (79%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| ||||||| || | || | || ||||||| ||||||||||||
Sbjct 2293 GTGTCAATGGCGTTGAAGAGGTACGTGCG-CTGAGCAGGCTCCTTGATGTAGGTGTCGAT 2351
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| || ||||||||||| ||||| ||||| || || |||||||||||| ||||||||
Sbjct 2352 GAGCAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCA 2411
Score = 91.5 bits (100), Expect = 2e-12
Identities = 136/191 (71%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| || || ||| ||| | |||||| ||| |||||||||||||| || ||||||
Sbjct 2030 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTC 2089
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| ||||||| ||| || ||| ||||| ||||| |||||||| ||
Sbjct 2090 TTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAAA 2149
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
|||| || |||| ||| || || | ||| | ||| |||||||| | |||||
Sbjct 2150 GCGACCAGACGCTGGGCGAA--TGAAGA-TTTCTCATCGTTAATCCACTTGAGAGCCCAG 2206
Query 794521 TCTGCCTTTTT 794531
|| ||||||||
Sbjct 2207 TCGGCCTTTTT 2217
>seq2519
Length=5298
Score = 100 bits (110), Expect = 5e-15
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662
||||||| || || ||||| | || || |||||| ||||||||| ||| |
Sbjct 3287 GGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGG 3228
Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722
||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| |
Sbjct 3227 GCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGA 3168
Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782
||||||| |||||||| | |||| ||| | | || || ||| | |||||||||||
Sbjct 3167 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCC 3108
Query 2069783 AGCGG 2069787
|| ||
Sbjct 3107 AGAGG 3103
Score = 91.5 bits (100), Expect = 2e-12
Identities = 155/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 2071770 GGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAG 2071829
||| ||||| | |||||| ||| ||| || ||| || ||| ||||| | ||
Sbjct 2476 GGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAG 2417
Query 2071830 CGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTA 2071889
| |||||| ||| || | || | ||| || || ||| |||| ||| |
Sbjct 2416 AGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAG 2357
Query 2071890 AAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTC 2071949
|||||| || || || ||| ||||||||| ||||| ||||| ||| || | ||||
Sbjct 2356 AAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTC 2297
Query 2071950 GACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994
|| || |||||||||||| ||||| |||||| ||||||||| ||
Sbjct 2296 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC 2252
>seq1577
Length=6503
Score = 93.3 bits (102), Expect = 7e-13
Identities = 147/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 2017463 GCCCGTCGAGCCAAAGCCGCCGGCACCGCGCTCGGTCTCGTCCAACGAATCGACCCACGC 2017522
|||||| ||| |||||||| || |||||| || |||| || | | | ||| |
Sbjct 1834 GCCCGTGCTGCCGAAGCCGCCAGCGCCGCGCACGCTCTCTTCGAGCTCCGCAACCTCGAC 1893
Query 2017523 GGGCTCGGGTTGGGCAATCTTT--TCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCC 2017580
| |||||| || ||| | |||| || | |||||||| || |||| || |
Sbjct 1894 GATCTCGGG--GGTGAATATGCGCTCGACGACGAGCTGGGCGACGCGGTCGCCCTCGGCA 1951
Query 2017581 ACGACGTGATCGGCGTCGGTATGGTTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCG 2017640
|| || ||||||||||| |||||| ||||| | ||| |||||||| || ||||||
Sbjct 1952 ACTTCGAAATCGGCGTCGGCATGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCG 2011
Query 2017641 GCATCGATGACGCCGGCGCCGACGTCGAT 2017669
|| |||||||| |||||||| ||||||
Sbjct 2012 GCGTCGATGACACCGGCGCCCGTGTCGAT 2040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915157656368165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |