Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7566 141 6e-29 seq1773 109 4e-19 seq1878 95.1 8e-15 >seq7566 Length=2327 Score = 141 bits (156), Expect = 6e-29 Identities = 164/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 1449 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 1390 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || |||||||||| || |||||||| | || | ||||||||||| Sbjct 1389 CTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTC 1330 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || |||| ||| | Sbjct 1329 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGA 1274 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| |||||||||||||| || |||||||||||||| Sbjct 1273 TAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 1234 >seq1773 Length=6176 Score = 109 bits (120), Expect = 4e-19 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| |||| | || || || ||||| ||||| |||| Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | ||||||||||| | || || ||||| Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 5221 CGATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 5162 Query 34968 A 34968 | Sbjct 5161 A 5161 >seq1878 Length=6026 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 5721 AGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCC 5780 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || |||||||||| || |||||||| | || | |||||||| || Sbjct 5781 TCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 5840 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | ||| || || | || || ||| Sbjct 5841 TGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTC 5900 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| || ||||||||||| Sbjct 5901 TTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325652173385465