Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_023423.1
Length=610033
Score E
Sequences producing significant alignments: (Bits) Value
seq6013 93.3 2e-13
>seq6013
Length=20722
Score = 93.3 bits (102), Expect = 2e-13
Identities = 151/214 (71%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 309633 AGTAGCATTGACCCTCTCGCCCCTCAAAGCTCCAACCTTCGATGCGACAAT-CTCCATCA 309691
||| |||| | || | |||| |||||| || | ||| | || | || ||| ||||
Sbjct 10992 AGTGGCATCGCCCTCCATGCCCTTCAAAG-TCGAGACTTTGCTGAGCAAACACTCGATCA 11050
Query 309692 ACTTGGCGATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTCAGGTCTCA 309751
| | || || ||||||||||| |||||||| |||||||||||| || || ||| | |
Sbjct 11051 AGTGAGCAATGGTCATACGAGACGGAATGGCGTGAGGGTTGATGATGATATCTGGTGTGA 11110
Query 309752 TTCCGGTGATTGGGTTGAAAGGCATATCTTCTTCAGGTACAATCAAACCAATAGTTCCCT 309811
| || | | | |||| ||||| ||||| | | | | | |||||| || ||||
Sbjct 11111 TGCCTTCG---GCGGTGAAGGGCATGTCTTCCTGACGATAGGTGACACCAATGGTGCCCT 11167
Query 309812 TTTGAGCGTGCCTGGAAGCAAACTTGTCACCAAT 309845
||||| |||| | || |||||||||||||| ||
Sbjct 11168 TTTGACCGTGACGCGACGCAAACTTGTCACCGAT 11201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1951718426007080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |