Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq6013 93.3 2e-13 >seq6013 Length=20722 Score = 93.3 bits (102), Expect = 2e-13 Identities = 151/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 309633 AGTAGCATTGACCCTCTCGCCCCTCAAAGCTCCAACCTTCGATGCGACAAT-CTCCATCA 309691 ||| |||| | || | |||| |||||| || | ||| | || | || ||| |||| Sbjct 10992 AGTGGCATCGCCCTCCATGCCCTTCAAAG-TCGAGACTTTGCTGAGCAAACACTCGATCA 11050 Query 309692 ACTTGGCGATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTCAGGTCTCA 309751 | | || || ||||||||||| |||||||| |||||||||||| || || ||| | | Sbjct 11051 AGTGAGCAATGGTCATACGAGACGGAATGGCGTGAGGGTTGATGATGATATCTGGTGTGA 11110 Query 309752 TTCCGGTGATTGGGTTGAAAGGCATATCTTCTTCAGGTACAATCAAACCAATAGTTCCCT 309811 | || | | | |||| ||||| ||||| | | | | | |||||| || |||| Sbjct 11111 TGCCTTCG---GCGGTGAAGGGCATGTCTTCCTGACGATAGGTGACACCAATGGTGCCCT 11167 Query 309812 TTTGAGCGTGCCTGGAAGCAAACTTGTCACCAAT 309845 ||||| |||| | || |||||||||||||| || Sbjct 11168 TTTGACCGTGACGCGACGCAAACTTGTCACCGAT 11201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951718426007080