Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2519 282 4e-71 seq7566 129 6e-25 seq3410 116 4e-21 seq1878 104 2e-17 seq1773 100 3e-16 >seq2519 Length=5298 Score = 282 bits (312), Expect = 4e-71 Identities = 1005/1551 (65%), Gaps = 61/1551 (4%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| |||||||| || || || || ||| | || | ||| || | || Sbjct 3285 TTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGC 3226 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||||||||||||||| ||||||| || | || || |||||| ||| || Sbjct 3225 TCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACG 3166 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| |||||||| | |||| | | || || | |||||||| ||||||||||| Sbjct 3165 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAG 3106 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || ||| || | || ||||||||||| ||||| || ||||| || | || | Sbjct 3105 AGGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAG 3046 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG-TTCGCAGCTCGCCTCGAGCGC 148558 |||||||||| ||| || || | | | ||||| | | ||| | ||| || Sbjct 3045 CCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAG-ACATGGTGAGGGC 2987 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGAC-TCG---CTTT 148614 ||| ||| || |||||| || | | ||||||| | ||| | | ||| | Sbjct 2986 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG----GTCGCGGGCTTCGGGAGACT 2931 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 || | ||||| || || || || || |||||||| ||||| || || | |||||||| Sbjct 2930 CGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGG 2871 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733 | ||||| ||||| | ||| || |||| || | || || |||||| ||||||| Sbjct 2870 GGCGGTGGCGCATGTTACTGTTGCGAGC-CTCTTGAACGGGGTAATGGTTGACGTCGATG 2812 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792 || ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 2811 ATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAG 2752 Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844 |||| || || | | | | |||| ||||| || ||||| || Sbjct 2751 ACACCCTCGTTGTAGTCAACAA---AAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACA 2695 Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATTTG 148901 || ||| || || |||| |||||| | |||||| | |||||| || ||||| || Sbjct 2694 GCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATG 2635 Query 148902 ATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTAC 148961 | || | |||||| || |||||||||| |||| || |||||||| |||||| | Sbjct 2634 GT---ACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAG 2578 Query 148962 GGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGC---AGGTCCTGCGCGCGC 149018 || |||||| || ||| | || | | || || | || | ||| || Sbjct 2577 GGGTTGCCAGTCTCGGTCTGGG---CCTCAAGGATAGCATACCAGAGCTTCTGAGC---- 2525 Query 149019 ACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 ||| || || | ||| |||| ||| ||||| ||||| ||| ||| Sbjct 2524 -CTTCATGGTC-TTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAAC 2467 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 ||||||||||||| ||| | | || ||||||| | |||||||| || | ||| | Sbjct 2466 TCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCT 2407 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 |||| | | || | |||||| || |||||||| | |||||| || | |||||| Sbjct 2406 CCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCA 2347 Query 149193 CGCGCCTTGCAGTCTTCGGC--GCCCATG-TTGCGGCGCAGGTTGAGCACGCTGAATATG 149249 || || || | | || | || || || |||||| | | | | ||| | | Sbjct 2346 CGAGC---GCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACG 2290 Query 149250 TCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGG 149306 || |||||||| ||||||| ||| | || | || || |||||| || |||||| Sbjct 2289 TCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGG 2230 Query 149307 TCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTG 149366 || |||| ||| || ||||||| || || |||| |||||| ||| |||| ||| || Sbjct 2229 TCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTA 2170 Query 149367 CCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATG 149426 || || || | |||| ||| || || | ||| || || | |||||| Sbjct 2169 CCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATA 2110 Query 149427 CCGCCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGAT 149485 || ||| | ||| ||||| |||| |||| ||| || ||||| |||||||| Sbjct 2109 CCACCGGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCGAT 2051 Query 149486 GCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGC 149545 | || ||||||| | || ||||| ||| | | || | | || || || Sbjct 2050 GGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGC 1991 Query 149546 CGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACT 149604 ||| | ||||| |||||| || || | || |||| ||||| | ||| | | Sbjct 1990 GTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGG-ACATCAAGTTGTAGGTTT 1932 Query 149605 CGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCT 149664 ||| ||||| || | ||| || || |||||| | |||||| ||||| | ||| || | Sbjct 1931 CGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTT 1872 Query 149665 GCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGT 149724 |||| | ||| || | ||| ||| ||||| | ||| | || | || ||| Sbjct 1871 GCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGA 1812 Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 |||| ||||||| ||||| ||||||||| ||| ||||||| | ||||| Sbjct 1811 AGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGTCGA 1761 >seq7566 Length=2327 Score = 129 bits (142), Expect = 6e-25 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| |||||||||||||||||| Sbjct 1434 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 1375 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||||| ||||| || |||||||| |||||| ||| Sbjct 1374 RGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGGATCTTGGACTT 1315 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 1314 GACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 1255 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1254 CTTCACGAAGATCTGCATG 1236 >seq3410 Length=4507 Score = 116 bits (128), Expect = 4e-21 Identities = 331/507 (65%), Gaps = 9/507 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || | || || |||||||| ||||| || ||||| ||| || ||||| | Sbjct 1720 CTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 1779 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | || || || | ||| | || || || Sbjct 1780 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACCAGAAG 1839 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || || ||||||||||||| ||| | | | ||||||||| |||| || Sbjct 1840 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGGGC 1899 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 ||||| || || | ||||||| ||| || | ||||| || || ||| | Sbjct 1900 ACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATGTC 1959 Query 120591 GAGCATAGTGTG---GCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGC 120647 || || || ||| || | | |||| | || | | |||||| || Sbjct 1960 CTCAATGACCTGCTTGCTGGGGCGGTTCT-TGAGATGGGAGTACAG-----CAGGCAGGC 2013 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 ||||| ||||| || ||||| || || || || ||||||||| || ||||||||||| Sbjct 2014 GAAGTCGGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGG 2073 Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767 ||||| || | |||||| |||| |||| || ||| || ||||| | || Sbjct 2074 CATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACC 2133 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCA 120827 ||| ||| ||| || ||||||| |||| ||| || | | ||| || ||||| Sbjct 2134 CTCAACGGCGGCGAAAGCGACCAGACGCTGGGCGAATGAAGATTTCTCATCGTTAATCCA 2193 Query 120828 CTTCATGGCCCACTCGGCCTTTTTGCG 120854 ||| | ||||| ||||||||||| || Sbjct 2194 CTTGAGAGCCCAGTCGGCCTTTTTACG 2220 >seq1878 Length=6026 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | || ||| |||||| || |||||||| Sbjct 5736 GTCGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCCTCAAGTTGCTTGCCA 5795 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | |||||||||||||||||||| || ||||| || |||||| ||| Sbjct 5796 GCGAAGATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTC 5855 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | |||||| | | |||||| || | || | || || ||||||| || Sbjct 5856 ACGTTGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTCTTTCCGGTCAAGGTC 5915 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 5916 TTGACGAAGATCTGCAT 5932 >seq1773 Length=6176 Score = 100 bits (110), Expect = 3e-16 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| || | || | |||||||||||||| ||||| || ||||| Sbjct 5307 GTCCTCGAGCTGCTTGCCGGCRAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTT 5248 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | || ||| || || | ||| | Sbjct 5247 GTCCTGGATCTTGGACTTGACATTGTCGATSGTGTCCGAGGACTCGACCTCAAGGGTAAT 5188 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 5187 GGTCTTACCCGTCAGGGTCTTCACGAAA 5160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483358952351400