Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 282 4e-71
seq7566 129 6e-25
seq3410 116 4e-21
seq1878 104 2e-17
seq1773 100 3e-16
>seq2519
Length=5298
Score = 282 bits (312), Expect = 4e-71
Identities = 1005/1551 (65%), Gaps = 61/1551 (4%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| |||||||| || || || || ||| | || | ||| || | ||
Sbjct 3285 TTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGC 3226
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
||||| |||||||||||||||| ||||||| || | || || |||||| ||| ||
Sbjct 3225 TCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACG 3166
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
||||| |||||||| | |||| | | || || | |||||||| |||||||||||
Sbjct 3165 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAG 3106
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| ||| || | || ||||||||||| ||||| || ||||| || | || |
Sbjct 3105 AGGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAG 3046
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG-TTCGCAGCTCGCCTCGAGCGC 148558
|||||||||| ||| || || | | | ||||| | | ||| | ||| ||
Sbjct 3045 CCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAG-ACATGGTGAGGGC 2987
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGAC-TCG---CTTT 148614
||| ||| || |||||| || | | ||||||| | ||| | | ||| |
Sbjct 2986 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG----GTCGCGGGCTTCGGGAGACT 2931
Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674
|| | ||||| || || || || || |||||||| ||||| || || | ||||||||
Sbjct 2930 CGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGG 2871
Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733
| ||||| ||||| | ||| || |||| || | || || |||||| |||||||
Sbjct 2870 GGCGGTGGCGCATGTTACTGTTGCGAGC-CTCTTGAACGGGGTAATGGTTGACGTCGATG 2812
Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792
|| ||| || ||||| || || |||| || | | | ||| | || |||||
Sbjct 2811 ATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAG 2752
Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844
|||| || || | | | | |||| ||||| || ||||| ||
Sbjct 2751 ACACCCTCGTTGTAGTCAACAA---AAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACA 2695
Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATTTG 148901
|| ||| || || |||| |||||| | |||||| | |||||| || ||||| ||
Sbjct 2694 GCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATG 2635
Query 148902 ATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTAC 148961
| || | |||||| || |||||||||| |||| || |||||||| |||||| |
Sbjct 2634 GT---ACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAG 2578
Query 148962 GGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGC---AGGTCCTGCGCGCGC 149018
|| |||||| || ||| | || | | || || | || | ||| ||
Sbjct 2577 GGGTTGCCAGTCTCGGTCTGGG---CCTCAAGGATAGCATACCAGAGCTTCTGAGC---- 2525
Query 149019 ACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072
||| || || | ||| |||| ||| ||||| ||||| ||| |||
Sbjct 2524 -CTTCATGGTC-TTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAAC 2467
Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132
||||||||||||| ||| | | || ||||||| | |||||||| || | ||| |
Sbjct 2466 TCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCT 2407
Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192
|||| | | || | |||||| || |||||||| | |||||| || | ||||||
Sbjct 2406 CCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCA 2347
Query 149193 CGCGCCTTGCAGTCTTCGGC--GCCCATG-TTGCGGCGCAGGTTGAGCACGCTGAATATG 149249
|| || || | | || | || || || |||||| | | | | ||| | |
Sbjct 2346 CGAGC---GCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACG 2290
Query 149250 TCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGG 149306
|| |||||||| ||||||| ||| | || | || || |||||| || ||||||
Sbjct 2289 TCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGG 2230
Query 149307 TCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTG 149366
|| |||| ||| || ||||||| || || |||| |||||| ||| |||| ||| ||
Sbjct 2229 TCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTA 2170
Query 149367 CCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATG 149426
|| || || | |||| ||| || || | ||| || || | ||||||
Sbjct 2169 CCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATA 2110
Query 149427 CCGCCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGAT 149485
|| ||| | ||| ||||| |||| |||| ||| || ||||| ||||||||
Sbjct 2109 CCACCGGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCGAT 2051
Query 149486 GCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGC 149545
| || ||||||| | || ||||| ||| | | || | | || || ||
Sbjct 2050 GGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGC 1991
Query 149546 CGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACT 149604
||| | ||||| |||||| || || | || |||| ||||| | ||| | |
Sbjct 1990 GTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGG-ACATCAAGTTGTAGGTTT 1932
Query 149605 CGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCT 149664
||| ||||| || | ||| || || |||||| | |||||| ||||| | ||| || |
Sbjct 1931 CGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTT 1872
Query 149665 GCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGT 149724
|||| | ||| || | ||| ||| ||||| | ||| | || | || |||
Sbjct 1871 GCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGA 1812
Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
|||| ||||||| ||||| ||||||||| ||| ||||||| | |||||
Sbjct 1811 AGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGTCGA 1761
>seq7566
Length=2327
Score = 129 bits (142), Expect = 6e-25
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| | ||| ||||||||||||||||||
Sbjct 1434 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 1375
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | |||||||||||||| ||||| || |||||||| |||||| |||
Sbjct 1374 RGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGGATCTTGGACTT 1315
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || || || || || ||
Sbjct 1314 GACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 1255
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 1254 CTTCACGAAGATCTGCATG 1236
>seq3410
Length=4507
Score = 116 bits (128), Expect = 4e-21
Identities = 331/507 (65%), Gaps = 9/507 (2%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || | || || |||||||| ||||| || ||||| ||| || ||||| |
Sbjct 1720 CTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 1779
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| | || || || | ||| | || || ||
Sbjct 1780 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACCAGAAG 1839
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530
||||| || || ||||||||||||| ||| | | | ||||||||| |||| ||
Sbjct 1840 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGGGC 1899
Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590
||||| || || | ||||||| ||| || | ||||| || || ||| |
Sbjct 1900 ACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATGTC 1959
Query 120591 GAGCATAGTGTG---GCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGC 120647
|| || || ||| || | | |||| | || | | |||||| ||
Sbjct 1960 CTCAATGACCTGCTTGCTGGGGCGGTTCT-TGAGATGGGAGTACAG-----CAGGCAGGC 2013
Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707
||||| ||||| || ||||| || || || || ||||||||| || |||||||||||
Sbjct 2014 GAAGTCGGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGG 2073
Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767
||||| || | |||||| |||| |||| || ||| || ||||| | ||
Sbjct 2074 CATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACC 2133
Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCA 120827
||| ||| ||| || ||||||| |||| ||| || | | ||| || |||||
Sbjct 2134 CTCAACGGCGGCGAAAGCGACCAGACGCTGGGCGAATGAAGATTTCTCATCGTTAATCCA 2193
Query 120828 CTTCATGGCCCACTCGGCCTTTTTGCG 120854
||| | ||||| ||||||||||| ||
Sbjct 2194 CTTGAGAGCCCAGTCGGCCTTTTTACG 2220
>seq1878
Length=6026
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || ||||| || | || ||| |||||| || ||||||||
Sbjct 5736 GTCGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCCTCAAGTTGCTTGCCA 5795
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | |||||||||||||||||||| || ||||| || |||||| |||
Sbjct 5796 GCGAAGATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTC 5855
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | |||||| | | |||||| || | || | || || ||||||| ||
Sbjct 5856 ACGTTGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTCTTTCCGGTCAAGGTC 5915
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 5916 TTGACGAAGATCTGCAT 5932
>seq1773
Length=6176
Score = 100 bits (110), Expect = 3e-16
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||| || | || | |||||||||||||| ||||| || |||||
Sbjct 5307 GTCCTCGAGCTGCTTGCCGGCRAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTT 5248
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||| | || ||| || || | ||| |
Sbjct 5247 GTCCTGGATCTTGGACTTGACATTGTCGATSGTGTCCGAGGACTCGACCTCAAGGGTAAT 5188
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
||| || || ||||| || || ||||||
Sbjct 5187 GGTCTTACCCGTCAGGGTCTTCACGAAA 5160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483358952351400
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