Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2519 116 4e-21 >seq2519 Length=5298 Score = 116 bits (128), Expect = 4e-21 Identities = 725/1145 (63%), Gaps = 43/1145 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || || ||||| | | || | || ||| | ||| Sbjct 3285 TTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGC 3226 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 |||||| |||| || ||||| || || || | ||| | || || |||||| ||| || Sbjct 3225 TCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACG 3166 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | ||| | ||||||| || | ||||||||| Sbjct 3165 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAG 3106 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | ||| ||| | || ||||||||||| ||||| || | || | | | || | Sbjct 3105 AGGTCCGAAGGCTTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAG 3046 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190 || || |||| ||| || || | |||| | ||||| | || ||| | Sbjct 3045 CCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGACATG--GTGAGGG 2988 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| ||||| ||| ||| | ||||| ||| || ||||| |||| Sbjct 2987 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACTCGA 2928 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 | ||||| || ||| || || |||||||| | |||||| | ||||| ||| || || | Sbjct 2927 AGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGC 2868 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT---ATGGGATAGTGGTTGCGATCAATAA 147367 | || ||| || | | || || | || | ||| || |||||| || || | Sbjct 2867 GGTGGCGCATGTTACT--GTTGCGAGC-CTCTTGAACGGGGTAATGGTTGACGTCGATGA 2811 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425 | |||| ||||| || || ||||| | || | | ||| |||| ||| || || Sbjct 2810 TTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAGA 2751 Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | | ||| | | || || | | | |||| || ||||| |||||||| | Sbjct 2750 CACCCTCGTTGTAGTCA---ACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAG 2694 Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCATTTTA 147541 | ||| || | ||| ||||| | ||| || | ||||||||| ||||| | Sbjct 2693 CGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGC---GAA 2637 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || || | || | ||| ||||| || || ||| || || ||| |||||||| | | Sbjct 2636 TGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGG 2577 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCACC 147660 | ||| |||||| || | |||| ||| | | || || | ||| || || Sbjct 2576 GGTTGCCAGTCTCGGTCTGGGCCTCAAGGAT-AGCATACCAGAGCTTCTGAGCCTTCATG 2518 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || || |||| | ||||||| ||| ||||| ||||||||| |||||| Sbjct 2517 GTCTTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCG 2458 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG-C 147779 ||||| ||||| | ||| || |||| || || ||||| || | ||| ||| |||| Sbjct 2457 TAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCA---GTC-TCCGTT 2402 Query 147780 GTTAACGCGTC---GCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836 || || || ||| || ||||| || | ||| || || | || || || || Sbjct 2401 CTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGC 2342 Query 147837 TTTGCAATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGG 147892 | ||||| || | ||||| || || ||| | | | ||| ||||| Sbjct 2341 GCGGACCTCCTCCTTTCCGTGATTCTTGCG---CAGATCCAAGAAGTCGA-AGACGTCGG 2286 Query 147893 CGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGA 147949 ||||||| || |||| ||||| ||| | ||||| |||| || || |||||||| | Sbjct 2285 CGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAA 2226 Query 147950 CATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGT 148009 | | ||| || ||||||| || || || | ||| || | | ||| | | || || | Sbjct 2225 CGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCAT 2166 Query 148010 TGGTG 148014 ||||| Sbjct 2165 TGGTG 2161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476550223554600