Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3288 127 2e-24 >seq3288 Length=4615 Score = 127 bits (140), Expect = 2e-24 Identities = 341/527 (65%), Gaps = 41/527 (8%) Strand=Plus/Minus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||||||| | || || | || ||||||| | ||||||||||||||| |||| | || Sbjct 1194 CCAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCGTCGCCCATGACGT 1135 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025 || | | || || ||| || | || | || | ||||| || |||| | || Sbjct 1134 GCGTCAGGCTGCCGGGGACGAGGTCGCACGCGCGCGCAATCATGTGCGTTAGCAAAGCGT 1075 Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085 ||||||| ||||||||||| || || |||||||| || | |||| |||||||||||||| Sbjct 1074 AGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGGC 1015 Query 147086 ACGAGAGCTCCCC----GTC-----------------------GGCC------------A 147106 | || | || ||| |||| | Sbjct 1014 AGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGCCCGTGGGTACGAAA 955 Query 147107 CGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 |||| ||||| ||| | |||||||| || || || ||||| |||||| |||||| Sbjct 954 CGTAGAACTGCGCAAAC-ATGTGGCATGGGGGGAGGGCCATCTTCTTCAGGTCGGCGGGG 896 Query 147166 TTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACC 147225 ||||| || | | | || | | | |||||| |||| | || | ||| || Sbjct 895 TTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAGCTTGTGGATGACT 836 Query 147226 CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCC 147285 |||||||| || ||||||||| ||| | ||| | | || |||||| ||| Sbjct 835 TCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGGAATCGACGTACTCGGCG 776 Query 147286 CCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAG 147345 || || |||||||| |||||||||||||| || || ||||||||| || | ||||| | Sbjct 775 CCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCTCGCGGTGCGTG 716 Query 147346 AAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 | ||| | | | || ||||| | || |||| | |||||||||| Sbjct 715 AGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCCAGAT 669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583413350004000