Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2519 174 2e-37 seq3410 127 3e-23 >seq2519 Length=5298 Score = 174 bits (192), Expect = 2e-37 Identities = 342/503 (68%), Gaps = 17/503 (3%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||| | |||||| ||||||| ||| ||| ||||| |||| |||||| Sbjct 1747 GCACAAGGAAGAGCTCGACTCTGCCATTGTATACGACCGCGACTTCAACTACCAGTACTT 1806 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | |||||| | || ||||| ||| | || | ||| ||| | Sbjct 1807 CGGCTTCAAAACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATCGCTGAGAG 1866 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 ||| || | ||| |||||||||||||| ||||| | |||| | |||| || Sbjct 1867 GCCGCAACACATGATCATGCGTGTCGCCGTTGGCA--TCTGGGGT----GACGACG---- 1916 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 | |||| ||| ||| |||||| | ||||| ||||| ||| ||||| | Sbjct 1917 -----TTGAGCGCGTCATCGAAACCTACAACTTGATGTC-CAGCAAGTTCTTCACGCACG 1970 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | ||||| ||||| || || || || || | | ||| || || ||||| || Sbjct 1971 CCTCTCCCACACTCTTCAACGCTGGTACCCCACAGGCCCAGCTATCCTCCTGCTTCCTCG 2030 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||||| ||||| |||||||| ||||||||||| |||||| ||||| | | Sbjct 2031 TCGACATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGA 2090 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||||| |||||| || ||||| | | ||| | || ||| | ||| ||| Sbjct 2091 TCTCCAAGATGGCCGGTGGTATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTCCT 2150 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || |||||||| || ||||| ||| |||| || |||||||| || || ||| Sbjct 2151 ACATTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAACA 2210 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 ||||||| |||||||| |||||| Sbjct 2211 ACACGGCTCGCTACGTTGACCAG 2233 Score = 98.7 bits (108), Expect = 1e-14 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGT 262933 || ||||||||||||| | ||| || | | | || | ||||| || | |||||||| Sbjct 3103 CCTCTGGGACTGGGACTCTCTGAAGGAG-CAGATCAAGCAGCACGGTGTCCGCAACTCTC 3161 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||||| |||| |||||| || |||| || ||||||||| ||||||||| |||| | Sbjct 3162 TGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAACAACGAGTGTT 3221 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 | ||| | ||| ||||||||| |||||| || || | ||||| || || | Sbjct 3222 TTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGAGTTCCAGGTCG 3281 Query 263054 TCAACC 263059 |||||| Sbjct 3282 TCAACC 3287 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| || || | | |||||| | |||||| |||| |||| |||| |||||| Sbjct 2532 AGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTCTACA 2591 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAA 262209 |||| |||| ||||| | ||||||||| ||||||| || |||| || ||| | || Sbjct 2592 AGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCG-CAGCT-CTAA 2649 Query 262210 CCTGTGCACCGAGATC 262225 ||||||||| |||||| Sbjct 2650 CCTGTGCACTGAGATC 2665 >seq3410 Length=4507 Score = 127 bits (140), Expect = 3e-23 Identities = 237/339 (70%), Gaps = 13/339 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| |||||||| |||||||| | || | Sbjct 2625 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATC 2567 Query 1455835 TCGGCGCCGACACGGTCCA---CTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 | | | | | |||| |||| | | | ||| || ||| | |||| Sbjct 2566 T-GTCAAAGGATC--TCCATGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCA 2510 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||| | |||||||| || ||||||| |||||||||||| ||||||||||| Sbjct 2509 TCTCGCACATTCTCGCCTTCTT-CGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTT 2451 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| | || || || | || ||||| | | |||||||| ||||||||| Sbjct 2450 GAGCGCTTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATC 2391 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||| ||||| || |||||||| || || |||||||||||| ||||||| Sbjct 2390 ATGATGGAGAACATTCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAG 2331 Query 1456069 CCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 || | || | || ||||||| |||||| ||||| Sbjct 2330 CCTGCTCAG-CGCACGTACCTCTTCAACGCCATTGACAC 2293 Score = 100 bits (110), Expect = 4e-15 Identities = 177/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||||||| || ||| |||||||| | ||||| | | || | |||| || Sbjct 1956 ATCATCGTCGATGCGGTCAAGATCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCC 1897 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||| | | ||| |||||||||| | || ||||||||||||| Sbjct 1896 CTGCTTGGCATGAACTCCAAC-TTGATGAAGCAGTACATTG-AGTTCGTCGCCGACCGCC 1839 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| | || ||| |||| | | ||||||| ||| | ||| Sbjct 1838 TTCTGGTTGCTCTTGGCAAC-GACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATG 1780 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCC 1456761 ||| ||||| || | |||||||||||||| || ||| || || || || ||| Sbjct 1779 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCTGACTACCAG 1720 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 1719 AAGGCCGGTGTCA 1707 Score = 95.1 bits (104), Expect = 2e-13 Identities = 118/155 (76%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||||||||||||||| | |||||||| ||| | ||| || || || ||| ||| Sbjct 2217 AAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA-TCTTCA-TTCGCCCAGC 2160 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATC 1456240 | || |||| || ||||| || ||||| ||||| ||| || ||| ||| ||||| Sbjct 2159 GTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC-GCGTCCATC 2101 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||||||||| || ||||||||||| || Sbjct 2100 TTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCT 2066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176824015438070