Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 174 2e-37
seq3410 127 3e-23
>seq2519
Length=5298
Score = 174 bits (192), Expect = 2e-37
Identities = 342/503 (68%), Gaps = 17/503 (3%)
Strand=Plus/Plus
Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740
||||||||| | |||||| ||||||| ||| ||| ||||| |||| ||||||
Sbjct 1747 GCACAAGGAAGAGCTCGACTCTGCCATTGTATACGACCGCGACTTCAACTACCAGTACTT 1806
Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800
|| | |||||| | || ||||| ||| | || | ||| ||| |
Sbjct 1807 CGGCTTCAAAACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATCGCTGAGAG 1866
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
||| || | ||| |||||||||||||| ||||| | |||| | |||| ||
Sbjct 1867 GCCGCAACACATGATCATGCGTGTCGCCGTTGGCA--TCTGGGGT----GACGACG---- 1916
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919
| |||| ||| ||| |||||| | ||||| ||||| ||| ||||| |
Sbjct 1917 -----TTGAGCGCGTCATCGAAACCTACAACTTGATGTC-CAGCAAGTTCTTCACGCACG 1970
Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979
| | ||||| ||||| || || || || || | | ||| || || ||||| ||
Sbjct 1971 CCTCTCCCACACTCTTCAACGCTGGTACCCCACAGGCCCAGCTATCCTCCTGCTTCCTCG 2030
Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039
| |||||||||| ||||| |||||||| ||||||||||| |||||| ||||| | |
Sbjct 2031 TCGACATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGA 2090
Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099
|||||||| |||||| || ||||| | | ||| | || ||| | ||| |||
Sbjct 2091 TCTCCAAGATGGCCGGTGGTATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTCCT 2150
Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159
|| | || |||||||| || ||||| ||| |||| || |||||||| || || |||
Sbjct 2151 ACATTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAACA 2210
Query 260160 ACACGGCGCGCTACGTCGACCAG 260182
||||||| |||||||| ||||||
Sbjct 2211 ACACGGCTCGCTACGTTGACCAG 2233
Score = 98.7 bits (108), Expect = 1e-14
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGT 262933
|| ||||||||||||| | ||| || | | | || | ||||| || | ||||||||
Sbjct 3103 CCTCTGGGACTGGGACTCTCTGAAGGAG-CAGATCAAGCAGCACGGTGTCCGCAACTCTC 3161
Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993
||||||| |||| |||||| || |||| || ||||||||| ||||||||| |||| |
Sbjct 3162 TGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAACAACGAGTGTT 3221
Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053
| ||| | ||| ||||||||| |||||| || || | ||||| || || |
Sbjct 3222 TTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGAGTTCCAGGTCG 3281
Query 263054 TCAACC 263059
||||||
Sbjct 3282 TCAACC 3287
Score = 91.5 bits (100), Expect = 2e-12
Identities = 104/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151
|| |||||| || || | | |||||| | |||||| |||| |||| |||| ||||||
Sbjct 2532 AGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTCTACA 2591
Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAA 262209
|||| |||| ||||| | ||||||||| ||||||| || |||| || ||| | ||
Sbjct 2592 AGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCG-CAGCT-CTAA 2649
Query 262210 CCTGTGCACCGAGATC 262225
||||||||| ||||||
Sbjct 2650 CCTGTGCACTGAGATC 2665
>seq3410
Length=4507
Score = 127 bits (140), Expect = 3e-23
Identities = 237/339 (70%), Gaps = 13/339 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| |||||||| |||||||| |||||||| | || |
Sbjct 2625 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATC 2567
Query 1455835 TCGGCGCCGACACGGTCCA---CTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888
| | | | | |||| |||| | | | ||| || ||| | ||||
Sbjct 2566 T-GTCAAAGGATC--TCCATGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCA 2510
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| |||| | |||||||| || ||||||| |||||||||||| |||||||||||
Sbjct 2509 TCTCGCACATTCTCGCCTTCTT-CGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTT 2451
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| ||||| | || || || | || ||||| | | |||||||| |||||||||
Sbjct 2450 GAGCGCTTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATC 2391
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068
|| || ||||| ||||| || |||||||| || || |||||||||||| |||||||
Sbjct 2390 ATGATGGAGAACATTCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAG 2331
Query 1456069 CCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106
|| | || | || ||||||| |||||| |||||
Sbjct 2330 CCTGCTCAG-CGCACGTACCTCTTCAACGCCATTGACAC 2293
Score = 100 bits (110), Expect = 4e-15
Identities = 177/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||||||||| || ||| |||||||| | ||||| | | || | |||| ||
Sbjct 1956 ATCATCGTCGATGCGGTCAAGATCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCC 1897
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||| ||| | | ||| |||||||||| | || |||||||||||||
Sbjct 1896 CTGCTTGGCATGAACTCCAAC-TTGATGAAGCAGTACATTG-AGTTCGTCGCCGACCGCC 1839
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| || | || || ||| | || ||| |||| | | ||||||| ||| | |||
Sbjct 1838 TTCTGGTTGCTCTTGGCAAC-GACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATG 1780
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCC 1456761
||| ||||| || | |||||||||||||| || ||| || || || || |||
Sbjct 1779 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCTGACTACCAG 1720
Query 1456762 AAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 1719 AAGGCCGGTGTCA 1707
Score = 95.1 bits (104), Expect = 2e-13
Identities = 118/155 (76%), Gaps = 5/155 (3%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
||||||||||||||||| | |||||||| ||| | ||| || || || ||| |||
Sbjct 2217 AAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA-TCTTCA-TTCGCCCAGC 2160
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATC 1456240
| || |||| || ||||| || ||||| ||||| ||| || ||| ||| |||||
Sbjct 2159 GTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC-GCGTCCATC 2101
Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| |||||||||||||| || ||||||||||| ||
Sbjct 2100 TTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCT 2066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176824015438070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |