Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 118 1e-21
seq1878 107 2e-18
seq1773 100 3e-16
>seq7566
Length=2327
Score = 118 bits (130), Expect = 1e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || |||||||| || || ||
Sbjct 1428 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAA 1369
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | || | | |||||||||| |||||| ||| | | |
Sbjct 1368 GATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 1309
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || |||||||| | ||||| || |||||||| | || |||||
Sbjct 1308 GTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCAC 1249
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 1248 GAAGATCTGCAT 1237
>seq1878
Length=6026
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || || || || |||| || || ||||| || || ||
Sbjct 5741 CTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAA 5800
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||| | | |||||| ||| |||||| ||||| ||
Sbjct 5801 GATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTCA-CGT 5859
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||||| ||| || || || || ||||| || || |
Sbjct 5860 TGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGA 5919
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 5920 CGAAGATCTGCAT 5932
>seq1773
Length=6176
Score = 100 bits (110), Expect = 3e-16
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| ||||||||||| |||| | ||| || |||| || |||||||| || || || |
Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | || | | |||||||||| |||||| ||| | | |
Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||| || || ||||| | || || || |||||||||| || ||||| |
Sbjct 5221 CGATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 5162
Query 35727 A 35727
|
Sbjct 5161 A 5161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450735926593800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |