Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7566 118 1e-21 seq1878 107 2e-18 seq1773 100 3e-16 >seq7566 Length=2327 Score = 118 bits (130), Expect = 1e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| || || || Sbjct 1428 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAA 1369 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 1368 GATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 1309 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || |||||||| | ||||| || |||||||| | || ||||| Sbjct 1308 GTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCAC 1249 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1248 GAAGATCTGCAT 1237 >seq1878 Length=6026 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || || || |||| || || ||||| || || || Sbjct 5741 CTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAA 5800 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||| | | |||||| ||| |||||| ||||| || Sbjct 5801 GATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTCA-CGT 5859 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || |||||||||| ||| || || || || ||||| || || | Sbjct 5860 TGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGA 5919 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 5920 CGAAGATCTGCAT 5932 >seq1773 Length=6176 Score = 100 bits (110), Expect = 3e-16 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| |||| | ||| || |||| || |||||||| || || || | Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||| || || ||||| | || || || |||||||||| || ||||| | Sbjct 5221 CGATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 5162 Query 35727 A 35727 | Sbjct 5161 A 5161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450735926593800