Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 129 6e-25
seq1878 116 4e-21
seq1773 114 1e-20
>seq7566
Length=2327
Score = 129 bits (142), Expect = 6e-25
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 1454 AGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1395
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct 1394 CCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCC 1335
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | |||||||| || ||||| || || ||
Sbjct 1334 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTG 1275
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || ||||| || | || || ||||| || |||||
Sbjct 1274 ATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237
>seq1878
Length=6026
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| ||||| || ||||| || ||||||||||| | | ||| | ||| ||
Sbjct 5724 ACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCCTCA 5783
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || ||||| || || |||||||||||||| ||||| || || || || || || ||
Sbjct 5784 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGG 5843
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | ||||| || || ||||| || | ||||| || ||
Sbjct 5844 ATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTCTTT 5903
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || ||||| || |||||
Sbjct 5904 CCGGTCAAGGTCTTGACGAAGATCTGCAT 5932
>seq1773
Length=6176
Score = 114 bits (126), Expect = 1e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| ||||||||||||||| || |||| | ||| |||||||| ||||| || || |
Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| ||||| || || || || || || || || || ||||| ||
Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | ||||| || || || || || || |||||||| ||||| || | || || ||||
Sbjct 5221 CGATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 5162
Query 134704 AA 134705
||
Sbjct 5161 AA 5160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505333740592200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |