Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 100 4e-16
seq3410 93.3 6e-14
>seq2519
Length=5298
Score = 100 bits (110), Expect = 4e-16
Identities = 334/520 (64%), Gaps = 0/520 (0%)
Strand=Plus/Minus
Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601
|||| || || || ||||| || ||||| | | ||| | | | | || |||| |
Sbjct 2447 CCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCT 2388
Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCAT 69661
|||| || |||||||||||||| || || | |||||| || | | | || || |
Sbjct 2387 TCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCT 2328
Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721
|||| ||| || ||||| | || || | | || | ||||| || || || |
Sbjct 2327 TTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGT 2268
Query 69722 ATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTAT 69781
| || || | | | || || || || || || ||||| || | ||| | || ||||| |
Sbjct 2267 AGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGT 2208
Query 69782 TATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAAC 69841
| |||| | ||||| || | || ||||| || ||||||| || || | ||| ||
Sbjct 2207 TGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGG 2148
Query 69842 TTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901
|| | || ||||| || | || || || || || ||||| || ||||| |
Sbjct 2147 AGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCA 2088
Query 69902 GAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAA 69961
|| ||| || | |||||||| |||||||| ||| ||| || |||||| | |
Sbjct 2087 TGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGA 2028
Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021
| || ||| || | || ||| || || || || || | ||| ||||| ||||
Sbjct 2027 GGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGT 1968
Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061
| ||||| | || || | || ||||| ||||| ||
Sbjct 1967 GCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTTTCGAT 1928
>seq3410
Length=4507
Score = 93.3 bits (102), Expect = 6e-14
Identities = 176/257 (68%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
|| || || ||||| || ||| ||||| || |||||||| ||||| || || | ||
Sbjct 2368 TCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCATCTGGCCTCGGGAACC 2427
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
||||| || | || | || ||| || || || || || ||||| |||||
Sbjct 2428 TGTACTTCGCCGCTGAAGCGCTCAACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCG 2487
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTCCAG 40090
|| || || | | || || || || || ||||| | || || || ||||||
Sbjct 2488 AAGAAGGCGAGAATGTGCGAGATGAAGTACTTCTCATCCTCGTTGATCTTGTTGTTCCAG 2547
Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
|||| || ||| ||||| | ||| | ||| || ||||||||||| || ||||| |||||
Sbjct 2548 TCATGGAGATCCTTTGACAGATCAATTTCCTCGGCTGTCCAAAAAGAGGCCTCAGCCTTC 2607
Query 40151 TTGTACATGTTCCATAT 40167
|||||||| | ||| ||
Sbjct 2608 TTGTACATCTGCCAGAT 2624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686820918605400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |