Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2519 100 4e-16 seq3410 93.3 6e-14 >seq2519 Length=5298 Score = 100 bits (110), Expect = 4e-16 Identities = 334/520 (64%), Gaps = 0/520 (0%) Strand=Plus/Minus Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601 |||| || || || ||||| || ||||| | | ||| | | | | || |||| | Sbjct 2447 CCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCT 2388 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCAT 69661 |||| || |||||||||||||| || || | |||||| || | | | || || | Sbjct 2387 TCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCT 2328 Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721 |||| ||| || ||||| | || || | | || | ||||| || || || | Sbjct 2327 TTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGT 2268 Query 69722 ATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTAT 69781 | || || | | | || || || || || || ||||| || | ||| | || ||||| | Sbjct 2267 AGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGT 2208 Query 69782 TATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAAC 69841 | |||| | ||||| || | || ||||| || ||||||| || || | ||| || Sbjct 2207 TGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGG 2148 Query 69842 TTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901 || | || ||||| || | || || || || || ||||| || ||||| | Sbjct 2147 AGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCA 2088 Query 69902 GAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAA 69961 || ||| || | |||||||| |||||||| ||| ||| || |||||| | | Sbjct 2087 TGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGA 2028 Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 | || ||| || | || ||| || || || || || | ||| ||||| |||| Sbjct 2027 GGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGT 1968 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 | ||||| | || || | || ||||| ||||| || Sbjct 1967 GCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTTTCGAT 1928 >seq3410 Length=4507 Score = 93.3 bits (102), Expect = 6e-14 Identities = 176/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || || ||||| || ||| ||||| || |||||||| ||||| || || | || Sbjct 2368 TCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCATCTGGCCTCGGGAACC 2427 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 ||||| || | || | || ||| || || || || || ||||| ||||| Sbjct 2428 TGTACTTCGCCGCTGAAGCGCTCAACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCG 2487 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTCCAG 40090 || || || | | || || || || || ||||| | || || || |||||| Sbjct 2488 AAGAAGGCGAGAATGTGCGAGATGAAGTACTTCTCATCCTCGTTGATCTTGTTGTTCCAG 2547 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 |||| || ||| ||||| | ||| | ||| || ||||||||||| || ||||| ||||| Sbjct 2548 TCATGGAGATCCTTTGACAGATCAATTTCCTCGGCTGTCCAAAAAGAGGCCTCAGCCTTC 2607 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 2608 TTGTACATCTGCCAGAT 2624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686820918605400