Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq280 86.0 5e-12 >seq280 Length=18670 Score = 86.0 bits (94), Expect = 5e-12 Identities = 189/282 (67%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||||| | || || || ||| || | ||||| | || || || || ||||| || Sbjct 2391 CCCAAAATCATCAACGGCCCCGAAGTCCTCAATAAGTTCGTCGGACAGTCTGAAGAGAAC 2450 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| ||||||| |||||||| |||| | | || | |||||| | | ||| Sbjct 2451 ATCCGAAAAATGTTTGCCGACGCTGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 2509 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT----- 19602 | ||||| || || | |||||||||||||| |||| ||||| ||||| ||| Sbjct 2510 CCTTCACATCATCATCTTTGATGAATTGGACGCCGTCTGCAAGCAGAGAGGATCTGGCGC 2569 Query 19603 ----GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 |||| | ||| || |||| |||||| || || || || |||| | ||||| Sbjct 2570 TGGCGGTGGTACTGGCGTCGGCGACAGTGTTGTTAACCAGCTTCTCACAAAGCTCGACGG 2629 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 ||| |||| || || || || | | || || ||||| || Sbjct 2630 TGTCGACCAGCTCAACAACATCCTGCTCATCGGTATGACCAA 2671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397406421711175