Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3410 100 9e-16 seq2519 87.8 6e-12 >seq3410 Length=4507 Score = 100 bits (110), Expect = 9e-16 Identities = 128/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| | |||| || |||||||| || | || || || | || || ||||| || || Sbjct 2169 TTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGT-GCCTT 2111 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 || |||||||||||| | || |||||||| || |||| ||| |||||||| ||||| Sbjct 2110 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGA 2051 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 || ||| ||| || ||||| | || |||||||||||| || || ||| || Sbjct 2050 GCTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTCC 1996 >seq2519 Length=5298 Score = 87.8 bits (96), Expect = 6e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||| || | || ||| | ||||| ||||||||| |||||||||||| || || || || Sbjct 2180 GGCGTTGTCCCTATGCTTCGTGTCTTCAACAACACGGCTCGCTACGTTGACCAGGGTGGT 2239 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 ||| || || || || || |||||||||| ||||| |||||||||||| Sbjct 2240 AACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCCGAC 2290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588127712069575