Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq3410 100 9e-16
seq2519 87.8 6e-12
>seq3410
Length=4507
Score = 100 bits (110), Expect = 9e-16
Identities = 128/175 (73%), Gaps = 1/175 (1%)
Strand=Plus/Minus
Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759
|||| | |||| || |||||||| || | || || || | || || ||||| || ||
Sbjct 2169 TTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGT-GCCTT 2111
Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819
|| |||||||||||| | || |||||||| || |||| ||| |||||||| |||||
Sbjct 2110 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGA 2051
Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874
|| ||| ||| || ||||| | || |||||||||||| || || ||| ||
Sbjct 2050 GCTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTCC 1996
>seq2519
Length=5298
Score = 87.8 bits (96), Expect = 6e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031
||| || | || ||| | ||||| ||||||||| |||||||||||| || || || ||
Sbjct 2180 GGCGTTGTCCCTATGCTTCGTGTCTTCAACAACACGGCTCGCTACGTTGACCAGGGTGGT 2239
Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082
||| || || || || || |||||||||| ||||| ||||||||||||
Sbjct 2240 AACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCCGAC 2290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588127712069575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |