Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_027984.1
Length=57677
Score E
Sequences producing significant alignments: (Bits) Value
seq3370 1409 0.0
>seq3370
Length=4554
Score = 1409 bits (1562), Expect = 0.0
Identities = 784/786 (99%), Gaps = 0/786 (0%)
Strand=Plus/Plus
Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 233
Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 22232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 293
Query 22233 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 22292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 353
Query 22293 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 22352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 413
Query 22353 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 22412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 473
Query 22413 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 22472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 533
Query 22473 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 22532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 593
Query 22533 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCG 22592
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 594 TATCACCAGCTCACCGTCTTTCATTGCCATACGTAATTCCGGATGAGCATTCATCAGGCG 653
Query 22593 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 22652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 713
Query 22653 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 22712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 773
Query 22713 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAt 22772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAT 833
Query 22773 ttttttCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCC 22832
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 TTTTTTCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGACAACTCAAAAAATACGCC 893
Query 22833 CGGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTC 22892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CGGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTC 953
Query 22893 TCATTT 22898
||||||
Sbjct 954 TCATTT 959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 184422382463730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |