Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq3370 1409 0.0 >seq3370 Length=4554 Score = 1409 bits (1562), Expect = 0.0 Identities = 784/786 (99%), Gaps = 0/786 (0%) Strand=Plus/Plus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 233 Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 22232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 293 Query 22233 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 22292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 353 Query 22293 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 22352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 413 Query 22353 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 22412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 473 Query 22413 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 22472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 533 Query 22473 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 22532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 593 Query 22533 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCG 22592 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 594 TATCACCAGCTCACCGTCTTTCATTGCCATACGTAATTCCGGATGAGCATTCATCAGGCG 653 Query 22593 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 22652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 713 Query 22653 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 22712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 773 Query 22713 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAt 22772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAT 833 Query 22773 ttttttCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCC 22832 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 834 TTTTTTCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGACAACTCAAAAAATACGCC 893 Query 22833 CGGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTC 22892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 CGGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTC 953 Query 22893 TCATTT 22898 |||||| Sbjct 954 TCATTT 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184422382463730