Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 199 5e-46
seq6468 100 4e-16
seq3410 87.8 2e-12
>seq2519
Length=5298
Score = 199 bits (220), Expect = 5e-46
Identities = 946/1478 (64%), Gaps = 65/1478 (4%)
Strand=Plus/Minus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||||||||||| ||||| || ||||| || || || || |||||||| || | |||
Sbjct 3248 GGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGC 3189
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || || | | ||| ||| || | ||| | || |||||| | |
Sbjct 3188 TGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCT 3129
Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGC-TTGGTTTCACCTTCCCACATGTCAAACTGA 110884
|||| ||| |||||||| || | | || || || || |||||||||| |||||
Sbjct 3128 CCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGCTTGACATT-CCACATGTCATACTGA 3070
Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944
|| | || ||||| | || || ||||| | || | || | || | ||| ||||
Sbjct 3069 AGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCC 3010
Query 110945 A-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
| | ||||| | |||| ||||| || ||||| || ||||| || |
Sbjct 3009 AGCTGCACAG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG 2951
Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058
|| |||||| || || | ||||| || | || ||| |||| ||
Sbjct 2950 GTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAA-----GCATCGGCA 2896
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC- 111117
||||| || ||||| | ||||| || | ||| ||||| || ||| | ||| || |||
Sbjct 2895 AGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATGTT--ACTGTTGCG-AGCCTCT 2839
Query 111118 --AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175
|||||| ||| || ||| |||| || ||| || || ||||| || ||
Sbjct 2838 TGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTC 2779
Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGA 111232
| || || || || | | || | | | ||| | | | ||| | | |||
Sbjct 2778 ACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTCAACAAAAGTGGGA 2722
Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292
|| |||| || |||| ||||| ||||| ||| || | | |||||| | ||
Sbjct 2721 AGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATC 2662
Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352
|| || || | ||| || || ||| || || | ||||| ||||| ||||| ||||
Sbjct 2661 TCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTG 2602
Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412
|||||||||||||||||| |||| | || ||||| ||||| | | || |||||
Sbjct 2601 GCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCA 2542
Query 111413 TTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCC------TCGTA 111465
| ||| | | || | | || |||| ||| ||||||| || |||||
Sbjct 2541 TACCAGAGCTTCTGAGCCT----TCATGGTCTTG---CGTCCCTTGCCCATCTGTTCGTA 2489
Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525
||| || | ||| ||||||||||| || ||||| | || || || |
Sbjct 2488 CTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATT 2429
Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585
|| || | ||||| ||| | || | ||| || | ||||||||| || || |||||
Sbjct 2428 GGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAAT 2369
Query 111586 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645
||| |||| |||||| || | | || |||| || | || || || || |
Sbjct 2368 CCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAG 2309
Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705
|| | ||| || | || || |||||||| |||||||| |||| || | | ||
Sbjct 2308 ATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC--- 2252
Query 111706 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759
||||| ||| | || | || ||||| || ||| ||| || || ||||||||
Sbjct 2251 GGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCAT 2192
Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819
|| | || |||| || |||||| || || ||| || | |||| | |
Sbjct 2191 AGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAAT 2132
Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTA 111877
|| | | || || ||||| || ||| ||| ||||| | ||||| | | | |
Sbjct 2131 GCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCA-AGT-CTTG 2074
Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937
|| || |||||||||| | ||| || || ||||| || ||| |||||||| |||
Sbjct 2073 AGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGAT 2014
Query 111938 ATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996
| ||| || || ||| |||||||| |||||||| || || | ||||| ||| | | |
Sbjct 2013 AGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGA--AGAAC 1957
Query 111997 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054
||| ||||||| || ||| || || | ||| |||| ||| || || ||||||
Sbjct 1956 TTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCA 1897
Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114
| ||||| ||||||| ||||| || || | || || |||| || ||| ||||
Sbjct 1896 ACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGC--TTGA 1839
Query 112115 --AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
|| || | || |||| | |||||||| || |||||
Sbjct 1838 GGAGGTATGATC-TCTCCAAGGTTTTGAAGCCGAAGTA 1802
>seq6468
Length=11497
Score = 100 bits (110), Expect = 4e-16
Identities = 201/294 (68%), Gaps = 12/294 (4%)
Strand=Plus/Minus
Query 182513 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 182572
|| ||||||||||||||||||||| || | ||| ||| | ||| ||||| ||| ||||
Sbjct 1772 GAGGAGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAGATGACC 1713
Query 182573 ATAGCGAAGTTCAGAAACATCTTGGTAGTCT---TTTCCTTGT--TGAAGACCAAGGATC 182627
||| || |||| | || || || | | | ||||| | |||||||||| |
Sbjct 1712 ATACCG-----CAGACTCTTCGTGTCGGTGTATGTCTGCTTGTGCTTCAGACCAAGGAAC 1658
Query 182628 TTCTTGAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACA 182687
| ||||| | | || ||||||||| ||| | ||| | | |||||||| || ||
Sbjct 1657 TGCTTGATGTTCTGGATTTCCTGGTTTTTTGTGATCTGGTCGATTGAAGCGTCACGGACG 1598
Query 182688 TTCTTACAT-TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAG 182746
||| ||| ||||| ||||| ||||| || ||| | |||| | | | | | |
Sbjct 1597 TTC-AGCATCTTACCACGAAGGGGGAAGACTCCGATGCGATCGGGGTCGAGAATGGCACG 1539
Query 182747 ACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACA 182800
|| ||||| || | | || || || ||||| || |||| ||||||||||||
Sbjct 1538 GCCGGCAACAGCCAAACTCTTGGCAGAGTCACCTTCGGTGAGAATGAGAGTACA 1485
>seq3410
Length=4507
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/217 (70%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||| |||||||| || || || || || || |||||| || || |||||||||||
Sbjct 2023 GTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2082
Query 122730 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788
|||||||| | ||| | || | ||| ||| | ||| ||||||||||||||| ||
Sbjct 2083 ACGCTTCTTGAGCCAGAAGATGGACGC-GAAGGCACCGCTGAAGAAGATACCCTCAACGG 2141
Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCA 122845
|| || || | || || | |||||| || ||| || |||| || ||| || |
Sbjct 2142 CGGCGAAAGCGACCAGACGCTGGGCGAATGA---AGATTTCTCATCGTTAATCCACTTGA 2198
Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882
||||| | ||||| || |||||| || || ||
Sbjct 2199 GAGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGT 2235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627951651156000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |