Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2519 199 5e-46 seq6468 100 4e-16 seq3410 87.8 2e-12 >seq2519 Length=5298 Score = 199 bits (220), Expect = 5e-46 Identities = 946/1478 (64%), Gaps = 65/1478 (4%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||||| ||||| || ||||| || || || || |||||||| || | ||| Sbjct 3248 GGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGC 3189 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || || | | ||| ||| || | ||| | || |||||| | | Sbjct 3188 TGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCT 3129 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGC-TTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||| ||| |||||||| || | | || || || || |||||||||| ||||| Sbjct 3128 CCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGCTTGACATT-CCACATGTCATACTGA 3070 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || ||||| | || || ||||| | || | || | || | ||| |||| Sbjct 3069 AGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCC 3010 Query 110945 A-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | | ||||| | |||| ||||| || ||||| || ||||| || | Sbjct 3009 AGCTGCACAG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG 2951 Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || |||||| || || | ||||| || | || ||| |||| || Sbjct 2950 GTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGAAGAGCCAGGAAA-----GCATCGGCA 2896 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC- 111117 ||||| || ||||| | ||||| || | ||| ||||| || ||| | ||| || ||| Sbjct 2895 AGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATGTT--ACTGTTGCG-AGCCTCT 2839 Query 111118 --AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 |||||| ||| || ||| |||| || ||| || || ||||| || || Sbjct 2838 TGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTC 2779 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGA 111232 | || || || || | | || | | | ||| | | | ||| | | ||| Sbjct 2778 ACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTCAACAAAAGTGGGA 2722 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || |||| || |||| ||||| ||||| ||| || | | |||||| | || Sbjct 2721 AGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATC 2662 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | ||| || || ||| || || | ||||| ||||| ||||| |||| Sbjct 2661 TCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTG 2602 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 |||||||||||||||||| |||| | || ||||| ||||| | | || ||||| Sbjct 2601 GCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCA 2542 Query 111413 TTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCC------TCGTA 111465 | ||| | | || | | || |||| ||| ||||||| || ||||| Sbjct 2541 TACCAGAGCTTCTGAGCCT----TCATGGTCTTG---CGTCCCTTGCCCATCTGTTCGTA 2489 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 ||| || | ||| ||||||||||| || ||||| | || || || | Sbjct 2488 CTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATT 2429 Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585 || || | ||||| ||| | || | ||| || | ||||||||| || || ||||| Sbjct 2428 GGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAAT 2369 Query 111586 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 ||| |||| |||||| || | | || |||| || | || || || || | Sbjct 2368 CCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAG 2309 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 || | ||| || | || || |||||||| |||||||| |||| || | | || Sbjct 2308 ATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC--- 2252 Query 111706 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 ||||| ||| | || | || ||||| || ||| ||| || || |||||||| Sbjct 2251 GGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCAT 2192 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 || | || |||| || |||||| || || ||| || | |||| | | Sbjct 2191 AGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAAT 2132 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTA 111877 || | | || || ||||| || ||| ||| ||||| | ||||| | | | | Sbjct 2131 GCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCA-AGT-CTTG 2074 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || |||||||||| | ||| || || ||||| || ||| |||||||| ||| Sbjct 2073 AGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGAT 2014 Query 111938 ATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 | ||| || || ||| |||||||| |||||||| || || | ||||| ||| | | | Sbjct 2013 AGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGA--AGAAC 1957 Query 111997 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 ||| ||||||| || ||| || || | ||| |||| ||| || || |||||| Sbjct 1956 TTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCA 1897 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114 | ||||| ||||||| ||||| || || | || || |||| || ||| |||| Sbjct 1896 ACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGC--TTGA 1839 Query 112115 --AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || || | || |||| | |||||||| || ||||| Sbjct 1838 GGAGGTATGATC-TCTCCAAGGTTTTGAAGCCGAAGTA 1802 >seq6468 Length=11497 Score = 100 bits (110), Expect = 4e-16 Identities = 201/294 (68%), Gaps = 12/294 (4%) Strand=Plus/Minus Query 182513 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 182572 || ||||||||||||||||||||| || | ||| ||| | ||| ||||| ||| |||| Sbjct 1772 GAGGAGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAGATGACC 1713 Query 182573 ATAGCGAAGTTCAGAAACATCTTGGTAGTCT---TTTCCTTGT--TGAAGACCAAGGATC 182627 ||| || |||| | || || || | | | ||||| | |||||||||| | Sbjct 1712 ATACCG-----CAGACTCTTCGTGTCGGTGTATGTCTGCTTGTGCTTCAGACCAAGGAAC 1658 Query 182628 TTCTTGAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACA 182687 | ||||| | | || ||||||||| ||| | ||| | | |||||||| || || Sbjct 1657 TGCTTGATGTTCTGGATTTCCTGGTTTTTTGTGATCTGGTCGATTGAAGCGTCACGGACG 1598 Query 182688 TTCTTACAT-TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAG 182746 ||| ||| ||||| ||||| ||||| || ||| | |||| | | | | | | Sbjct 1597 TTC-AGCATCTTACCACGAAGGGGGAAGACTCCGATGCGATCGGGGTCGAGAATGGCACG 1539 Query 182747 ACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACA 182800 || ||||| || | | || || || ||||| || |||| |||||||||||| Sbjct 1538 GCCGGCAACAGCCAAACTCTTGGCAGAGTCACCTTCGGTGAGAATGAGAGTACA 1485 >seq3410 Length=4507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| |||||||| || || || || || || |||||| || || ||||||||||| Sbjct 2023 GTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2082 Query 122730 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 |||||||| | ||| | || | ||| ||| | ||| ||||||||||||||| || Sbjct 2083 ACGCTTCTTGAGCCAGAAGATGGACGC-GAAGGCACCGCTGAAGAAGATACCCTCAACGG 2141 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCA 122845 || || || | || || | |||||| || ||| || |||| || ||| || | Sbjct 2142 CGGCGAAAGCGACCAGACGCTGGGCGAATGA---AGATTTCTCATCGTTAATCCACTTGA 2198 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 ||||| | ||||| || |||||| || || || Sbjct 2199 GAGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGT 2235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627951651156000