Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 242 5e-59
seq3410 104 3e-17
>seq2519
Length=5298
Score = 242 bits (268), Expect = 5e-59
Identities = 949/1476 (64%), Gaps = 31/1476 (2%)
Strand=Plus/Minus
Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214
||||| || || ||| || | | | ||||| || | ||||| |||||||| |||||
Sbjct 3273 AACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCG 3214
Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274
||||| |||||||| || | ||| ||| || |||||||| || | ||| || |||
Sbjct 3213 TTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTG 3154
Query 118275 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTC 118334
|||| ||| | | | | || | ||||| |||| ||||||||| || | | | |
Sbjct 3153 CGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGC 3094
Query 118335 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 118394
| | | |||||| ||| |||| ||||| || ||||| | ||||| ||||| | |||
Sbjct 3093 TTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTC 3034
Query 118395 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 118451
| ||||||||||| | | |||| | | || | | |||||| ||||| ||
Sbjct 3033 TGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGACATGGT---GAGGGCAGCGTGGTAG 2977
Query 118452 ATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511
|| || || || || || | | ||| ||| || || || | | ||
Sbjct 2976 ATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGA 2917
Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571
| || |||| || ||||| || |||||||||||||| ||||| || | |||
Sbjct 2916 AGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATG 2857
Query 118572 TTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631
||| || ||||| | ||||| ||| || ||||| | || || || ||
Sbjct 2856 TTACTGTTGCGAGCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTG 2797
Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691
||||||| || | || || ||||| | | | || | | | ||| |
Sbjct 2796 CGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTG 2740
Query 118692 TTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748
| | ||| | | ||||| |||| || ||||| || || |||| | ||| || |
Sbjct 2739 TAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGA 2680
Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808
| |||||| || || || ||||||| ||| || || |||||| || | ||||||
Sbjct 2679 GCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTC 2620
Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868
|| || ||| ||| ||||||||||| |||||| | || | || ||||| ||
Sbjct 2619 TGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTC 2560
Query 118869 TGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTG--GCGTTGGCTCGC 118925
|||| || || ||||| | ||||| | || | ||| || || |||| || ||
Sbjct 2559 TGGGCCTCAAGGATAGCATACCAGAGCTTCTG-AGCCTTCATGGTCTTGCGTCC-CTTGC 2502
Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985
|| ||| |||||||| || | ||| |||||||| || || | || | |
Sbjct 2501 CCATCTGT-TCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAG 2443
Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045
|| || || || ||||| | |||| ||| | || || ||| || | |||||||
Sbjct 2442 CCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATG 2383
Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105
||||| || || |||||||| || ||||| || ||| ||| | || || | ||
Sbjct 2382 AAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCG 2323
Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165
||||| |||| ||||| ||||| | || || |||||||| || || ||||| |
Sbjct 2322 TGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATG 2263
Query 119166 GCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222
|| | | || ||| |||| |||||| || || | || ||| ||| ||
Sbjct 2262 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAG 2203
Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACT 119280
||||||||||| || | | |||| ||| ||||| || || || || ||| |
Sbjct 2202 ACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCC- 2144
Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340
| |||| | | ||| | | || || ||||| || ||| ||| ||||| |
Sbjct 2143 -AGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGG 2085
Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400
|||| | |||| || | ||||| || ||||| || || |||| | ||| |||||
Sbjct 2084 CGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGA 2025
Query 119401 AGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459
||||| || | || |||||| || ||||||||||||||||| || || | |||||
Sbjct 2024 AGCAGGAGGATAGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGC 1966
Query 119460 ATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 119517
||| | | |||| ||||||| || |||||| || | |||| || ||| || |
Sbjct 1965 GTGA--AGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCAC 1908
Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 119577
| || || | | ||| ||||| | ||||| ||| || | || | | || |
Sbjct 1907 CCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGT 1848
Query 119578 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
| ||| | ||||||| |||||||||| ||||
Sbjct 1847 CAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGA 1812
>seq3410
Length=4507
Score = 104 bits (114), Expect = 3e-17
Identities = 339/520 (65%), Gaps = 14/520 (3%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| ||||||||
Sbjct 1724 TAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 1783
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || ||||| || || | | || | | |||| || || ||
Sbjct 1784 AAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAGAAGGCG 1842
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||||||||||| |||| | ||||||||| || | ||| |||
Sbjct 1843 GTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGGGCACA 1902
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| | || || | |||| ||| ||| || | || || || | |||| | |
Sbjct 1903 AGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATGTCCTC 1962
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | ||| || | | ||| | | | | || || ||| || ||
Sbjct 1963 AATGACCTGCTTGCTGGGGCGGTTCTTGAGATGGGAGTACAGCAGG--CA-GGCGAAGTC 2019
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
|||||| ||||| ||||| |||||||| || || |||||| ||| || ||||||||
Sbjct 2020 GGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAG 2079
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | || | || ||||||||| ||||| ||
Sbjct 2080 ACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAAC 2139
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
||||| || | ||||||| || || || || || ||| || ||||||
Sbjct 2140 GGCGGCGAAAGCGACCAGACGCTGGGCGAATGA---AGATTTCTCATCGTTAATCCACTT 2196
Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTC 130240
| ||||| | |||||||| ||||| || || |||
Sbjct 2197 GAGAGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGTC 2236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618356078946600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |