Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2519 242 5e-59 seq3410 104 3e-17 >seq2519 Length=5298 Score = 242 bits (268), Expect = 5e-59 Identities = 949/1476 (64%), Gaps = 31/1476 (2%) Strand=Plus/Minus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214 ||||| || || ||| || | | | ||||| || | ||||| |||||||| ||||| Sbjct 3273 AACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGCTCAAAACACTCG 3214 Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274 ||||| |||||||| || | ||| ||| || |||||||| || | ||| || ||| Sbjct 3213 TTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTG 3154 Query 118275 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTC 118334 |||| ||| | | | | || | ||||| |||| ||||||||| || | | | | Sbjct 3153 CGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCCGAAGGC 3094 Query 118335 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 118394 | | | |||||| ||| |||| ||||| || ||||| | ||||| ||||| | ||| Sbjct 3093 TTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGCGAGCCCTCGTACGTC 3034 Query 118395 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 118451 | ||||||||||| | | |||| | | || | | |||||| ||||| || Sbjct 3033 TGGTATGGGCCCTCCTCTTTAGCCAGCTGCACAGACATGGT---GAGGGCAGCGTGGTAG 2977 Query 118452 ATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 || || || || || || | | ||| ||| || || || | | || Sbjct 2976 ATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACTCGAAGGGCATGCGA 2917 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 | || |||| || ||||| || |||||||||||||| ||||| || | ||| Sbjct 2916 AGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATG 2857 Query 118572 TTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 ||| || ||||| | ||||| ||| || ||||| | || || || || Sbjct 2856 TTACTGTTGCGAGCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTG 2797 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691 ||||||| || | || || ||||| | | | || | | | ||| | Sbjct 2796 CGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTG 2740 Query 118692 TTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 | | ||| | | ||||| |||| || ||||| || || |||| | ||| || | Sbjct 2739 TAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGA 2680 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | |||||| || || || ||||||| ||| || || |||||| || | |||||| Sbjct 2679 GCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTC 2620 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||| ||| ||||||||||| |||||| | || | || ||||| || Sbjct 2619 TGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTC 2560 Query 118869 TGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTG--GCGTTGGCTCGC 118925 |||| || || ||||| | ||||| | || | ||| || || |||| || || Sbjct 2559 TGGGCCTCAAGGATAGCATACCAGAGCTTCTG-AGCCTTCATGGTCTTGCGTCC-CTTGC 2502 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 || ||| |||||||| || | ||| |||||||| || || | || | | Sbjct 2501 CCATCTGT-TCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAG 2443 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || || || || ||||| | |||| ||| | || || ||| || | ||||||| Sbjct 2442 CCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATG 2383 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||| || || |||||||| || ||||| || ||| ||| | || || | || Sbjct 2382 AAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCG 2323 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 ||||| |||| ||||| ||||| | || || |||||||| || || ||||| | Sbjct 2322 TGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATG 2263 Query 119166 GCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 || | | || ||| |||| |||||| || || | || ||| ||| || Sbjct 2262 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAG 2203 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACT 119280 ||||||||||| || | | |||| ||| ||||| || || || || ||| | Sbjct 2202 ACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCC- 2144 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | |||| | | ||| | | || || ||||| || ||| ||| ||||| | Sbjct 2143 -AGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGG 2085 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 |||| | |||| || | ||||| || ||||| || || |||| | ||| ||||| Sbjct 2084 CGCAAGTCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGA 2025 Query 119401 AGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 ||||| || | || |||||| || ||||||||||||||||| || || | ||||| Sbjct 2024 AGCAGGAGGATAGCTG-GGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGC 1966 Query 119460 ATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 119517 ||| | | |||| ||||||| || |||||| || | |||| || ||| || | Sbjct 1965 GTGA--AGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCAC 1908 Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 119577 | || || | | ||| ||||| | ||||| ||| || | || | | || | Sbjct 1907 CCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGT 1848 Query 119578 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 | ||| | ||||||| |||||||||| |||| Sbjct 1847 CAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGA 1812 >seq3410 Length=4507 Score = 104 bits (114), Expect = 3e-17 Identities = 339/520 (65%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| |||||||| Sbjct 1724 TAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 1783 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || | | || | | |||| || || || Sbjct 1784 AAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAGAAGGCG 1842 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||||| |||| | ||||||||| || | ||| ||| Sbjct 1843 GTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCAAGCAGGGCACA 1902 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || | || || | |||| ||| ||| || | || || || | |||| | | Sbjct 1903 AGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGACCGCATCGACGATGATGTCCTC 1962 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 |||| || | ||| || | | ||| | | | | || || ||| || || Sbjct 1963 AATGACCTGCTTGCTGGGGCGGTTCTTGAGATGGGAGTACAGCAGG--CA-GGCGAAGTC 2019 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||| ||||| ||||| |||||||| || || |||||| ||| || |||||||| Sbjct 2020 GGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAG 2079 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 2080 ACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGCACCGCTGAAGAAGATACCCTCAAC 2139 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200 ||||| || | ||||||| || || || || || ||| || |||||| Sbjct 2140 GGCGGCGAAAGCGACCAGACGCTGGGCGAATGA---AGATTTCTCATCGTTAATCCACTT 2196 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTC 130240 | ||||| | |||||||| ||||| || || ||| Sbjct 2197 GAGAGCCCAGTCGGCCTTTTTACGAATACAGGGAACTGTC 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618356078946600