Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 251 8e-62
seq3410 150 2e-31
>seq2519
Length=5298
Score = 251 bits (278), Expect = 8e-62
Identities = 1134/1771 (64%), Gaps = 47/1771 (3%)
Strand=Plus/Plus
Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288
||||| ||||||| || ||| | || || || || ||| |||| ||| | || |
Sbjct 1875 ACATGATCATGCGTGTCGCCGTTGGCATCTGGGGTGACGACGTTGAGCGCGTCATCGAAA 1934
Query 104289 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 104346
| ||| || ||||||| |||| | | ||| ||||| | || || |||||||| ||
Sbjct 1935 CCTACAACTTGATGTCCAGCAAGTTCT--TCACGCACGCCTCTCCCACACTCTTCAACGC 1992
Query 104347 TGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406
|||||| ||| |||| | ||| |||||||| ||| || ||||| || || ||
Sbjct 1993 TGGTACCCCACAGGCCCAGCTATCCTCCTGCTTCCTCGTCGACATGAAGGAAGATTCCAT 2052
Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGT 104464
| | |||||||||| || || | | | | ||||| | ||||| ||| ||| || |||
Sbjct 2053 CGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCTCCAAGATGGCCGGTGGT 2110
Query 104465 ATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 104524
|| || || | | || | | |||| | || ||| || || ||||||
Sbjct 2111 ATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTCCTACATTGCCGGCACCAATGGT 2170
Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584
|| |||| || | || |||||||| || || ||| ||| || ||||| || |
Sbjct 2171 ACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAACAACACGGCTCGCTACGTTGAC 2230
Query 104585 CAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638
|| | ||| ||||| || | | || |||| |||||||| ||||||||
Sbjct 2231 CAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCC 2287
Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGTGCC 104696
|| || | || ||| | || |||| || || || | ||||||| |||| | |
Sbjct 2288 GACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAAGGAGGAGGTCCGCGCT--C 2345
Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756
| || ||||| || ||||||||||| |||||||||||||||||||| ||| ||| |
Sbjct 2346 GTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAGAAGAACG 2405
Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816
| | ||| |||| | || || | || || || | |||| | || ||||
Sbjct 2406 GAGACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGCCGACTGCTACGGCGAGG 2465
Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTGCC 104874
||||||| ||| | || |||||||| ||| || | | ||| || ||| ||
Sbjct 2466 AGTTTGAGGCCTTGTATGAGAAGTACGA-ACAGATGGGCAAGGGAC-GCAAGACCATGAA 2523
Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933
||| | || | | ||| | ||||| || || | || ||||||||||| | || | ||
Sbjct 2524 GGCT-CAGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCA 2582
Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993
|||| ||||| || ||| |||| ||||| || || ||||| | ||| || |
Sbjct 2583 TGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCA 2642
Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053
| || || || || || || ||| | || | | || ||| ||||| || |
Sbjct 2643 GCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGACGAGGTCGCTGTCTGCA 2702
Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTAT 105112
|||| || || |||| || |||| | ||| || | || || | | | || |
Sbjct 2703 ACCTGGCCTCGCTCGCACTTCCCACTTTTGTTGACTACAACGAGGGTGTC-TACGACTTC 2761
Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172
| || |||||||| || || | ||| ||||| |||||| | || ||
Sbjct 2762 CAGAAGCTCCACGAGGTGACCCAGGTTGTTGTTCGCAACCTGAACAGAATCATCGACGTC 2821
Query 105173 AATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 105232
|| |||||||||| | ||||| || ||| ||| | ||||| || ||||| |||
Sbjct 2822 AACCATTACCCCGTTCAAGAGGCTCGCAACAGTAACATGCGCCACCGCCCCATTGGCCTC 2881
Query 105233 GGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 105292
||||| |||||||| || |||| ||| | | |||| | || || || ||||
Sbjct 2882 GGTGTGCAGGGTCTTGCCGATGCTTTCCTGGCTCTTCGCATGCCCTTCGAGTCTCCCGAA 2941
Query 105293 GCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCTTGAGGCGA 105350
|| || |||| | || || |||||||| || ||||| | ||| | |
Sbjct 2942 GCCCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCACCATGTCT 3001
Query 105351 GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCAC 105410
|| | || |||| | | || || ||||| | || | ||||| || || | || |
Sbjct 3002 GTGC--AGCTGGCTAAAGAGGAGGGCCCATACCAGACGTACGAGGGCTCGCCTGTCTCCC 3059
Query 105411 AAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAG 105470
| || | ||||| | ||| |||||| | | || | | | || ||||||||
Sbjct 3060 AGGGCATCCTTCAGTATGACATGTGGAATGTCAAGCCTTCGGACCTCTGGGACTGGGACT 3119
Query 105471 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGC 105530
|||| ||||| | |||||| || | ||| | || ||| ||| ||| | || || ||||
Sbjct 3120 CTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGCGCCCATGC 3179
Query 105531 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGA 105590
| || ||| ||| | || |||||||| || || || || ||||| |||||||| | |
Sbjct 3180 CGACTGCCAGCACTTCGCAGATCTTGGGCAACAACGAGTGTTTTGAGCCCTACACCTCAA 3239
Query 105591 ACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGG 105650
||||||| | | | | ||| || || ||||| | | |||||| || |
Sbjct 3240 ACATCTACCAGCGCCGTGTCCTTGCTGGCGAGTTCCAGGTCGTCAACCCTTGGCTTCTTA 3299
Query 105651 ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCAT-GGTGAAA 105706
| ||||| || || || || |||||| | | |||||| | | |||| | || |
Sbjct 3300 AGGACCTTGTCGACATGGGCCTATGGTCCGATGCCATGAAGAACCGTATCATCGCCGAGA 3359
Query 105707 GCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGC 105766
| ||||| ||||| || ||| | || || | || | ||| |||||
Sbjct 3360 AC----GGTTCAATTCAGAACATTCCCAACATCCCCACAGAGGTCAAGGCTCTGTACAAG 3415
Query 105767 ACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 105826
|| |||||||||||| | |||| || | ||||| || ||||||||| ||||
Sbjct 3416 ACCGTTTGGGAAATCTCCCAGCGTACTGTCGTTCAGATGGCTGCCGATCGTGGTGCCTTC 3475
Query 105827 ATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCT 105884
||||||| |||| ||| | ||| | |||| | ||| || ||| |||| ||
Sbjct 3476 ATTGATC--AGTCGCAGTCGCTCAATATTCACATGAAGGATCCCACTATGGGCAAGATCA 3533
Query 105885 CTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGAT 105944
| |||||| | | | |||||| |||||||| ||||| ||||| || || ||
Sbjct 3534 CCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTCAAGACGGGCATGTACTATCTGCGTA 3593
Query 105945 CTAAGGCAAAGGC-GCGCCCAATTCAGTTCA 105974
| |||| || ||| || ||||||||||
Sbjct 3594 CACAGGCCGCTGCTGCG-CCTATTCAGTTCA 3623
>seq3410
Length=4507
Score = 150 bits (166), Expect = 2e-31
Identities = 166/217 (76%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788
|||||||| ||||||| || || || || |||||| | |||||| || ||| ||
Sbjct 2235 ACAGTTCCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA 2176
Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848
|| ||| || || |||| || |||| || || ||||||||||||||||||
Sbjct 2175 TC---TTCATTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGC 2119
Query 94849 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907
||| ||||| ||| | || | |||||||||||||| ||||||||||| || || |||
Sbjct 2118 GGTGCCTTC-GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTT 2060
Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|||||||||||| ||||||||||| ||||||||||||
Sbjct 2059 CTCCAACGAGCTCATCTCTCGTGATGAGGGACTCCAC 2023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583186179071400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |