Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2519 251 8e-62 seq3410 150 2e-31 >seq2519 Length=5298 Score = 251 bits (278), Expect = 8e-62 Identities = 1134/1771 (64%), Gaps = 47/1771 (3%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| || ||| | || || || || ||| |||| ||| | || | Sbjct 1875 ACATGATCATGCGTGTCGCCGTTGGCATCTGGGGTGACGACGTTGAGCGCGTCATCGAAA 1934 Query 104289 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 104346 | ||| || ||||||| |||| | | ||| ||||| | || || |||||||| || Sbjct 1935 CCTACAACTTGATGTCCAGCAAGTTCT--TCACGCACGCCTCTCCCACACTCTTCAACGC 1992 Query 104347 TGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406 |||||| ||| |||| | ||| |||||||| ||| || ||||| || || || Sbjct 1993 TGGTACCCCACAGGCCCAGCTATCCTCCTGCTTCCTCGTCGACATGAAGGAAGATTCCAT 2052 Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGT 104464 | | |||||||||| || || | | | | ||||| | ||||| ||| ||| || ||| Sbjct 2053 CGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCTCCAAGATGGCCGGTGGT 2110 Query 104465 ATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 104524 || || || | | || | | |||| | || ||| || || |||||| Sbjct 2111 ATCGGCCTGAATGTTCACCGCATTCGTGCCACTGGCTCCTACATTGCCGGCACCAATGGT 2170 Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584 || |||| || | || |||||||| || || ||| ||| || ||||| || | Sbjct 2171 ACCTCCAATGGCGTTGTCCCTATGCTTCGTGTCTTCAACAACACGGCTCGCTACGTTGAC 2230 Query 104585 CAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638 || | ||| ||||| || | | || |||| |||||||| |||||||| Sbjct 2231 CAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCC 2287 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGTGCC 104696 || || | || ||| | || |||| || || || | ||||||| |||| | | Sbjct 2288 GACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAAGGAGGAGGTCCGCGCT--C 2345 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | || ||||| || ||||||||||| |||||||||||||||||||| ||| ||| | Sbjct 2346 GTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAGAAGAACG 2405 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 | | ||| |||| | || || | || || || | |||| | || |||| Sbjct 2406 GAGACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGCCGACTGCTACGGCGAGG 2465 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTGCC 104874 ||||||| ||| | || |||||||| ||| || | | ||| || ||| || Sbjct 2466 AGTTTGAGGCCTTGTATGAGAAGTACGA-ACAGATGGGCAAGGGAC-GCAAGACCATGAA 2523 Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| | || | | ||| | ||||| || || | || ||||||||||| | || | || Sbjct 2524 GGCT-CAGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCA 2582 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| || ||| |||| ||||| || || ||||| | ||| || | Sbjct 2583 TGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCA 2642 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | || || || || || || ||| | || | | || ||| ||||| || | Sbjct 2643 GCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGACGAGGTCGCTGTCTGCA 2702 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTAT 105112 |||| || || |||| || |||| | ||| || | || || | | | || | Sbjct 2703 ACCTGGCCTCGCTCGCACTTCCCACTTTTGTTGACTACAACGAGGGTGTC-TACGACTTC 2761 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | || |||||||| || || | ||| ||||| |||||| | || || Sbjct 2762 CAGAAGCTCCACGAGGTGACCCAGGTTGTTGTTCGCAACCTGAACAGAATCATCGACGTC 2821 Query 105173 AATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 105232 || |||||||||| | ||||| || ||| ||| | ||||| || ||||| ||| Sbjct 2822 AACCATTACCCCGTTCAAGAGGCTCGCAACAGTAACATGCGCCACCGCCCCATTGGCCTC 2881 Query 105233 GGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 105292 ||||| |||||||| || |||| ||| | | |||| | || || || |||| Sbjct 2882 GGTGTGCAGGGTCTTGCCGATGCTTTCCTGGCTCTTCGCATGCCCTTCGAGTCTCCCGAA 2941 Query 105293 GCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCTTGAGGCGA 105350 || || |||| | || || |||||||| || ||||| | ||| | | Sbjct 2942 GCCCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCACCATGTCT 3001 Query 105351 GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCAC 105410 || | || |||| | | || || ||||| | || | ||||| || || | || | Sbjct 3002 GTGC--AGCTGGCTAAAGAGGAGGGCCCATACCAGACGTACGAGGGCTCGCCTGTCTCCC 3059 Query 105411 AAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAG 105470 | || | ||||| | ||| |||||| | | || | | | || |||||||| Sbjct 3060 AGGGCATCCTTCAGTATGACATGTGGAATGTCAAGCCTTCGGACCTCTGGGACTGGGACT 3119 Query 105471 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGC 105530 |||| ||||| | |||||| || | ||| | || ||| ||| ||| | || || |||| Sbjct 3120 CTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGCGCCCATGC 3179 Query 105531 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGA 105590 | || ||| ||| | || |||||||| || || || || ||||| |||||||| | | Sbjct 3180 CGACTGCCAGCACTTCGCAGATCTTGGGCAACAACGAGTGTTTTGAGCCCTACACCTCAA 3239 Query 105591 ACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGG 105650 ||||||| | | | | ||| || || ||||| | | |||||| || | Sbjct 3240 ACATCTACCAGCGCCGTGTCCTTGCTGGCGAGTTCCAGGTCGTCAACCCTTGGCTTCTTA 3299 Query 105651 ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCAT-GGTGAAA 105706 | ||||| || || || || |||||| | | |||||| | | |||| | || | Sbjct 3300 AGGACCTTGTCGACATGGGCCTATGGTCCGATGCCATGAAGAACCGTATCATCGCCGAGA 3359 Query 105707 GCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGC 105766 | ||||| ||||| || ||| | || || | || | ||| ||||| Sbjct 3360 AC----GGTTCAATTCAGAACATTCCCAACATCCCCACAGAGGTCAAGGCTCTGTACAAG 3415 Query 105767 ACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 105826 || |||||||||||| | |||| || | ||||| || ||||||||| |||| Sbjct 3416 ACCGTTTGGGAAATCTCCCAGCGTACTGTCGTTCAGATGGCTGCCGATCGTGGTGCCTTC 3475 Query 105827 ATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCT 105884 ||||||| |||| ||| | ||| | |||| | ||| || ||| |||| || Sbjct 3476 ATTGATC--AGTCGCAGTCGCTCAATATTCACATGAAGGATCCCACTATGGGCAAGATCA 3533 Query 105885 CTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGAT 105944 | |||||| | | | |||||| |||||||| ||||| ||||| || || || Sbjct 3534 CCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTCAAGACGGGCATGTACTATCTGCGTA 3593 Query 105945 CTAAGGCAAAGGC-GCGCCCAATTCAGTTCA 105974 | |||| || ||| || |||||||||| Sbjct 3594 CACAGGCCGCTGCTGCG-CCTATTCAGTTCA 3623 >seq3410 Length=4507 Score = 150 bits (166), Expect = 2e-31 Identities = 166/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788 |||||||| ||||||| || || || || |||||| | |||||| || ||| || Sbjct 2235 ACAGTTCCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA 2176 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || ||| || || |||| || |||| || || |||||||||||||||||| Sbjct 2175 TC---TTCATTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGC 2119 Query 94849 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 ||| ||||| ||| | || | |||||||||||||| ||||||||||| || || ||| Sbjct 2118 GGTGCCTTC-GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTT 2060 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||||| ||||||||||| |||||||||||| Sbjct 2059 CTCCAACGAGCTCATCTCTCGTGATGAGGGACTCCAC 2023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583186179071400