Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq563 125 2e-23
seq1878 116 1e-20
seq7566 98.7 3e-15
seq386 93.3 1e-13
>seq563
Length=8646
Score = 125 bits (138), Expect = 2e-23
Identities = 323/487 (66%), Gaps = 4/487 (1%)
Strand=Plus/Plus
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
||| | || || || ||||| || || || |||||||| || || || || || ||
Sbjct 1596 GTTGTCACGGTTCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGT 1655
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
|||||| || | ||||| || | || || || || ||||| || || || || ||
Sbjct 1656 CTCATTGCCGGCCTCAATGTCCTGCGCATCATCAACGAGCCCACGGCCGCTGCCATCGCC 1715
Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || ||||| || | || || || || |||| || || ||| | ||||||
Sbjct 1716 TACGGTCTTGACAAGAAGACCGATGGTGAGCGCAACGTTCTCATCTTCGATCTCGGTGGT 1775
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
||||| || ||||| || || || || |||| ||||| || || || || || | ||
Sbjct 1776 GGTACCTTCGATGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACC 1835
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
|||||||| || || | ||||| || || || || || |||||||| || || ||
Sbjct 1836 GCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTC 1895
Query 349913 AAAGAATTTAAGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTC 349970
|| || || ||||| ||||| || | || | | || || | | || |||| |
Sbjct 1896 AACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCAG-CAACGCCCGCGCCCTGCGCC 1953
Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030
| || | || || || || ||||| ||||| || | || ||| | |||| ||||| |
Sbjct 1954 GTCTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCGTCTTCCGCCCAGACCTCCA 2013
Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090
| || || || || || || || | || |||| | || || || |||||||| |
Sbjct 2014 TCGAGATCGACTCGCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGCT 2073
Query 350091 TTGAAGA 350097
| || ||
Sbjct 2074 TCGAGGA 2080
>seq1878
Length=6026
Score = 116 bits (128), Expect = 1e-20
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || ||||| || ||||| || || || || || ||| | ||| || || ||
Sbjct 5721 AGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCC 5780
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|||||||| || ||||| ||||| | ||| ||||| || ||||| || || || ||||||
Sbjct 5781 TCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 5840
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || | || || || || |||| || || | || || || | |||| ||||
Sbjct 5841 TGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTC 5900
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| | || || || || ||||||||
Sbjct 5901 TTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932
>seq7566
Length=2327
Score = 98.7 bits (108), Expect = 3e-15
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 1467 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1408
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || || || ||||| | || ||||| || ||
Sbjct 1407 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGG 1348
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 1347 RGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTC 1288
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || || ||||||||
Sbjct 1287 CACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237
>seq386
Length=9116
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/145 (74%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| | || || |||||| | || || ||| || || | ||||||||||||
Sbjct 7362 ATTTCTTTGAGACGAGGAACACCAAGCGTCACGTTC---TTGGAAGAAACACCAGCAAAA 7418
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||| || || || || | || || | |||||||| || ||||| || || || ||
Sbjct 7419 TGGAAGGTGTTCAGCGTCATCTGCGTGGCAGGCTCACCGATAGACTGGGCCGCGATGACA 7478
Query 377566 CCAACCATTTCTCCAGGATTGACAA 377590
||||||||||| |||||| ||||||
Sbjct 7479 CCAACCATTTCACCAGGACTGACAA 7503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515055695693705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |