Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq563 125 2e-23 seq1878 116 1e-20 seq7566 98.7 3e-15 seq386 93.3 1e-13 >seq563 Length=8646 Score = 125 bits (138), Expect = 2e-23 Identities = 323/487 (66%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 ||| | || || || ||||| || || || |||||||| || || || || || || Sbjct 1596 GTTGTCACGGTTCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGT 1655 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 |||||| || | ||||| || | || || || || ||||| || || || || || Sbjct 1656 CTCATTGCCGGCCTCAATGTCCTGCGCATCATCAACGAGCCCACGGCCGCTGCCATCGCC 1715 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | || || || || |||| || || ||| | |||||| Sbjct 1716 TACGGTCTTGACAAGAAGACCGATGGTGAGCGCAACGTTCTCATCTTCGATCTCGGTGGT 1775 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || || || || |||| ||||| || || || || || | || Sbjct 1776 GGTACCTTCGATGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACC 1835 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 |||||||| || || | ||||| || || || || || |||||||| || || || Sbjct 1836 GCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTC 1895 Query 349913 AAAGAATTTAAGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTC 349970 || || || ||||| ||||| || | || | | || || | | || |||| | Sbjct 1896 AACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCAG-CAACGCCCGCGCCCTGCGCC 1953 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 | || | || || || || ||||| ||||| || | || ||| | |||| ||||| | Sbjct 1954 GTCTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCGTCTTCCGCCCAGACCTCCA 2013 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 | || || || || || || || | || |||| | || || || |||||||| | Sbjct 2014 TCGAGATCGACTCGCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGCT 2073 Query 350091 TTGAAGA 350097 | || || Sbjct 2074 TCGAGGA 2080 >seq1878 Length=6026 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || ||||| || ||||| || || || || || ||| | ||| || || || Sbjct 5721 AGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCC 5780 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 |||||||| || ||||| ||||| | ||| ||||| || ||||| || || || |||||| Sbjct 5781 TCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 5840 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || || || || |||| || || | || || || | |||| |||| Sbjct 5841 TGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTC 5900 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| | || || || || |||||||| Sbjct 5901 TTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932 >seq7566 Length=2327 Score = 98.7 bits (108), Expect = 3e-15 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 1467 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1408 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| | || ||||| || || Sbjct 1407 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGG 1348 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 1347 RGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTC 1288 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 1287 CACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237 >seq386 Length=9116 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || || |||||| | || || ||| || || | |||||||||||| Sbjct 7362 ATTTCTTTGAGACGAGGAACACCAAGCGTCACGTTC---TTGGAAGAAACACCAGCAAAA 7418 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | || || | |||||||| || ||||| || || || || Sbjct 7419 TGGAAGGTGTTCAGCGTCATCTGCGTGGCAGGCTCACCGATAGACTGGGCCGCGATGACA 7478 Query 377566 CCAACCATTTCTCCAGGATTGACAA 377590 ||||||||||| |||||| |||||| Sbjct 7479 CCAACCATTTCACCAGGACTGACAA 7503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515055695693705