Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 300 2e-76
seq6468 158 1e-33
>seq2519
Length=5298
Score = 300 bits (332), Expect = 2e-76
Identities = 524/755 (69%), Gaps = 18/755 (2%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| |||||| | || ||| ||||||||| ||| ||| || || |||
Sbjct 1881 TCATGCGTGTCGCCGTTGGCATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 1940
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | |||| ||| ||||||||| | || || || ||||||||||||||
Sbjct 1941 ACTTGATGTCCAGCAAGTTCTTCACGCACGCCTCTCCCACACTCTTCAACGCTGGTACCC 2000
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| | ||| | || ||||||||| || | |||||||| || || ||||| || |
Sbjct 2001 CACAGGCCCAGCTATCCTCCTGCTTCCTCGTCGACATGAAGGAAGATTCCATCGAGGGTA 2060
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
|||| || || |||||| || ||| ||||||||| | | ||||||||||| |
Sbjct 2061 TCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGTATCGGCCTGA 2120
Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
| || || | || | ||||| | ||| | || || || || || | || |
Sbjct 2121 A-TGTTC-ACCGCATTCGTGCCACTGGCTCCTACATTGCCGGCACCAATGGTACCTCCAA 2178
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| | || |||||||| || ||||||||||||||||| || ||||| ||||||||||
Sbjct 2179 TGGCGTTGTCCCTATGCTTCGTGTCTTCAACAACACGGCTCGCTACGTTGACCAGGGTGG 2238
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
| ||||| || | || ||||||||||| ||||| |||||||||||| | | ||
Sbjct 2239 TAACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCCGACGTCTTCGA 2298
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
|| | || ||||| |||||| || | || ||| | ||| |||||||| |||
Sbjct 2299 CTTCTTGGATCTGCGCAAGAATCACGGAAAGGAGGAGGTCCGCGCTCGTGACCTCTTTCT 2358
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| || |||||||| || ||||||||| | | || |||||| ||| || ||| ||
Sbjct 2359 TGCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAGAAGAACGGAGACTGGACTCT 2418
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
|||||||| || |||||||| ||| | | | || |||||| ||||||||| | |
Sbjct 2419 TATGTGCCCCAATGAGTGCCCGGGCTTGGCCGACTG-CTACGGCGAGGAGTTTGAGGCCT 2477
Query 53790 TGTATCGGACGTACG--CAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843
||||| || ||||| ||| | |||| ||| |||| | ||||| |
Sbjct 2478 TGTATGAGAAGTACGAACAGATGGGCAAGGGACGC------AAGACCATGAAGGCTCAGA 2531
Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903
|| | ||| |||| ||||| || |||| ||||| || | || | |||| |||||
Sbjct 2532 AGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTCTACA 2591
Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||||| | | |||| ||||||||||||||||||
Sbjct 2592 AGGATGCCGCCAACCGCAAGAGCAACCAGAAGAAC 2626
Score = 125 bits (138), Expect = 8e-24
Identities = 550/851 (65%), Gaps = 36/851 (4%)
Strand=Plus/Plus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||| ||||| ||||| | ||||| ||| ||||||||| | |||||
Sbjct 2756 GACTTCCAGAAGCTCCACGAGGTGACCCAGGTTGTTGTTCGCAACCTGAACAGAATCATC 2815
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
||| || | ||||| | ||| ||| ||||| ||| | || ||||| |||||
Sbjct 2816 GACGTCAACCATTACCCCGTTCAAGAGGCTCGCAACAGTAACATGCGCCACCGCCCCATT 2875
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| | ||||||| ||||| | ||||| ||| || || | |||||||||| ||
Sbjct 2876 GGCCTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTGGCTCTTCGCATGCCCTTCGAGTCT 2935
Query 55277 ---GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332
||| || || || | ||| || | |||||| || | ||||||| || || ||
Sbjct 2936 CCCGAA---GCCCGCGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCTGCCCT 2991
Query 55333 CGAGGAGTCGTGT-CATCTGGCTAT-GAGCGAGGGGACCTACGAGACGTTCCGTGATTCG 55390
| ||| ||| || ||||||| ||| ||||| | ||| |||||| | | |||
Sbjct 2992 CACCATGTC-TGTGCAGCTGGCTAAAGAG-GAGGGCCCATACCAGACGTACGAGGGCTCG 3049
Query 55391 CCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAGTCT---GACCCCATG 55444
|| | | |||| | || |||| || | ||| | |||| || |||| | |
Sbjct 3050 CCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGGAATGTCAAGCCTTCGGACCTCTGG 3109
Query 55445 ---TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTG 55501
| ||| ||||| | | || | | || | |||||||| ||||||||
Sbjct 3110 GACTGGGACTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTC 3169
Query 55502 GCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCG 55561
||||| ||||| || || || | |||||| |||||||||||||| || |||||
Sbjct 3170 GCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAACAACGAGTGTTTTGAGCCC 3229
Query 55562 TACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAG 55621
||||| | |||||||||| |||||| ||| || || ||||| | |||||
Sbjct 3230 TACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGAGTTCCAGGTCGTCAACCCT 3289
Query 55622 CACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGA 55677
|| | |||||||| | || | ||| ||| | || |||| || |
Sbjct 3290 TGGCTTCTTAAGGACCTTGTCGACATGGGCCTATGG--TCCGATGCCATGAAGAACCGTA 3347
Query 55678 T-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGAT-TCCTCTGCGTCTCAAG 55732
| || | |||| || || | ||||| || | || || | | | |||||
Sbjct 3348 TCATCGCCGAGAAC---GGTTCAATTCAGAACATTCCCAACATCCCCACAGAG-GTCAAG 3403
Query 55733 GAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGAT 55792
| | ||| ||| || ||||| || | ||| | | | || | ||| ||| |||
Sbjct 3404 GCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACTGTCGTTCAGATGGCTGCCGAT 3463
Query 55793 CGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTG 55852
|||||||| | ||| || ||||| ||||| || || || |||| || |||| | ||
Sbjct 3464 CGTGGTGCCTTCATTGATCAGTCGCAGTCGCTCAATATTCACATGAAGGATCCCACTATG 3523
Query 55853 GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTAC 55912
| |||| | | | |||||||| ||| |||||| || ||||||||||| ||||||
Sbjct 3524 GGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTCAAGACGGGCATGTAC 3583
Query 55913 TATCTGCGGAC 55923
|||||||| ||
Sbjct 3584 TATCTGCGTAC 3594
>seq6468
Length=11497
Score = 158 bits (174), Expect = 1e-33
Identities = 209/290 (72%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
||||| || | ||||| |||||| ||||| || || || | || || | ||| |||
Sbjct 2518 ATGTAACGAGGACTGGCGGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 2459
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| ||| ||||| |||||||| |||||| || ||||| || | | | || ||
Sbjct 2458 GGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGCGCAAGACCGATGATGGTC 2399
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
||| ||| |||||||||||||| || | ||||||||| | |||||| || |||||
Sbjct 2398 TGCTGAAGAGAGGCTTCACCGTGGTGGTAGGACGTCTGCTCGGAGATGTAACCAGCCAAT 2339
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| | |||||| ||| | || || |||||| ||||||||| || |||||||||
Sbjct 2338 TCAACGACCTTCTGATCCTTGACAAGATTTCTCTTGAAACAGGCGTACATGACCTTGCGC 2279
Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
|| |||||||| ||||| || ||| ||| || || ||| || ||||
Sbjct 2278 TGACCAGGTTTCAATCCGTCGACGACGGAAGGGATGGATCGCATGTTGTC 2229
Score = 127 bits (140), Expect = 2e-24
Identities = 205/293 (70%), Gaps = 4/293 (1%)
Strand=Plus/Minus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| || || |||||| ||||| |||||||| | |||||| | |||
Sbjct 2519 AATGTAACGAGGACTGGCGGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 2460
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
||||||| | ||| | |||||||| |||||||||||| || || | || || ||
Sbjct 2459 GGGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGCGCAAGACCGATGATGGT 2400
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
|| || || ||||| ||||| || | ||||||||| | | ||| || ||||
Sbjct 2399 CTGCTGAAGAGAGGCTTCACCGTGGTGGTAGGACGTCTGCTCGGAGATGTAACCAGCCAA 2340
Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547
| | | |||||| || |||| || || |||||| ||||| || || ||||||
Sbjct 2339 TTCAACGACCTTCTGATCCTTGAC--AAGATTTCTCTTGAAACAGGCGTACATGACCTTG 2282
Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
||||||| || |||| || || | ||| |||||| || ||| || ||||
Sbjct 2281 CGCTGACCAGGTTTCAATCCGTCGACGACGGAAGGGATGGATCGCATGTTGTC 2229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547145990553000
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