Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2519 300 2e-76 seq6468 158 1e-33 >seq2519 Length=5298 Score = 300 bits (332), Expect = 2e-76 Identities = 524/755 (69%), Gaps = 18/755 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||| ||||||||| ||| ||| || || ||| Sbjct 1881 TCATGCGTGTCGCCGTTGGCATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 1940 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | |||| ||| ||||||||| | || || || |||||||||||||| Sbjct 1941 ACTTGATGTCCAGCAAGTTCTTCACGCACGCCTCTCCCACACTCTTCAACGCTGGTACCC 2000 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| | || ||||||||| || | |||||||| || || ||||| || | Sbjct 2001 CACAGGCCCAGCTATCCTCCTGCTTCCTCGTCGACATGAAGGAAGATTCCATCGAGGGTA 2060 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 |||| || || |||||| || ||| ||||||||| | | ||||||||||| | Sbjct 2061 TCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGTATCGGCCTGA 2120 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | || || | || | ||||| | ||| | || || || || || | || | Sbjct 2121 A-TGTTC-ACCGCATTCGTGCCACTGGCTCCTACATTGCCGGCACCAATGGTACCTCCAA 2178 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| | || |||||||| || ||||||||||||||||| || ||||| |||||||||| Sbjct 2179 TGGCGTTGTCCCTATGCTTCGTGTCTTCAACAACACGGCTCGCTACGTTGACCAGGGTGG 2238 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | ||||| || | || ||||||||||| ||||| |||||||||||| | | || Sbjct 2239 TAACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCCGACGTCTTCGA 2298 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 || | || ||||| |||||| || | || ||| | ||| |||||||| ||| Sbjct 2299 CTTCTTGGATCTGCGCAAGAATCACGGAAAGGAGGAGGTCCGCGCTCGTGACCTCTTTCT 2358 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || |||||||| || ||||||||| | | || |||||| ||| || ||| || Sbjct 2359 TGCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAGAAGAACGGAGACTGGACTCT 2418 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||| || |||||||| ||| | | | || |||||| ||||||||| | | Sbjct 2419 TATGTGCCCCAATGAGTGCCCGGGCTTGGCCGACTG-CTACGGCGAGGAGTTTGAGGCCT 2477 Query 53790 TGTATCGGACGTACG--CAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 ||||| || ||||| ||| | |||| ||| |||| | ||||| | Sbjct 2478 TGTATGAGAAGTACGAACAGATGGGCAAGGGACGC------AAGACCATGAAGGCTCAGA 2531 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 || | ||| |||| ||||| || |||| ||||| || | || | |||| ||||| Sbjct 2532 AGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCAACCCCTTCATGCTCTACA 2591 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||||| | | |||| |||||||||||||||||| Sbjct 2592 AGGATGCCGCCAACCGCAAGAGCAACCAGAAGAAC 2626 Score = 125 bits (138), Expect = 8e-24 Identities = 550/851 (65%), Gaps = 36/851 (4%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| ||||| | ||||| ||| ||||||||| | ||||| Sbjct 2756 GACTTCCAGAAGCTCCACGAGGTGACCCAGGTTGTTGTTCGCAACCTGAACAGAATCATC 2815 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || | ||||| | ||| ||| ||||| ||| | || ||||| ||||| Sbjct 2816 GACGTCAACCATTACCCCGTTCAAGAGGCTCGCAACAGTAACATGCGCCACCGCCCCATT 2875 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | | ||||||| ||||| | ||||| ||| || || | |||||||||| || Sbjct 2876 GGCCTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTGGCTCTTCGCATGCCCTTCGAGTCT 2935 Query 55277 ---GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332 ||| || || || | ||| || | |||||| || | ||||||| || || || Sbjct 2936 CCCGAA---GCCCGCGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCTGCCCT 2991 Query 55333 CGAGGAGTCGTGT-CATCTGGCTAT-GAGCGAGGGGACCTACGAGACGTTCCGTGATTCG 55390 | ||| ||| || ||||||| ||| ||||| | ||| |||||| | | ||| Sbjct 2992 CACCATGTC-TGTGCAGCTGGCTAAAGAG-GAGGGCCCATACCAGACGTACGAGGGCTCG 3049 Query 55391 CCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAGTCT---GACCCCATG 55444 || | | |||| | || |||| || | ||| | |||| || |||| | | Sbjct 3050 CCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGGAATGTCAAGCCTTCGGACCTCTGG 3109 Query 55445 ---TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTG 55501 | ||| ||||| | | || | | || | |||||||| |||||||| Sbjct 3110 GACTGGGACTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTC 3169 Query 55502 GCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCG 55561 ||||| ||||| || || || | |||||| |||||||||||||| || ||||| Sbjct 3170 GCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAACAACGAGTGTTTTGAGCCC 3229 Query 55562 TACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAG 55621 ||||| | |||||||||| |||||| ||| || || ||||| | ||||| Sbjct 3230 TACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGAGTTCCAGGTCGTCAACCCT 3289 Query 55622 CACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGA 55677 || | |||||||| | || | ||| ||| | || |||| || | Sbjct 3290 TGGCTTCTTAAGGACCTTGTCGACATGGGCCTATGG--TCCGATGCCATGAAGAACCGTA 3347 Query 55678 T-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGAT-TCCTCTGCGTCTCAAG 55732 | || | |||| || || | ||||| || | || || | | | ||||| Sbjct 3348 TCATCGCCGAGAAC---GGTTCAATTCAGAACATTCCCAACATCCCCACAGAG-GTCAAG 3403 Query 55733 GAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGAT 55792 | | ||| ||| || ||||| || | ||| | | | || | ||| ||| ||| Sbjct 3404 GCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACTGTCGTTCAGATGGCTGCCGAT 3463 Query 55793 CGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTG 55852 |||||||| | ||| || ||||| ||||| || || || |||| || |||| | || Sbjct 3464 CGTGGTGCCTTCATTGATCAGTCGCAGTCGCTCAATATTCACATGAAGGATCCCACTATG 3523 Query 55853 GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTAC 55912 | |||| | | | |||||||| ||| |||||| || ||||||||||| |||||| Sbjct 3524 GGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTCAAGACGGGCATGTAC 3583 Query 55913 TATCTGCGGAC 55923 |||||||| || Sbjct 3584 TATCTGCGTAC 3594 >seq6468 Length=11497 Score = 158 bits (174), Expect = 1e-33 Identities = 209/290 (72%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | ||||| |||||| ||||| || || || | || || | ||| ||| Sbjct 2518 ATGTAACGAGGACTGGCGGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 2459 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| ||| ||||| |||||||| |||||| || ||||| || | | | || || Sbjct 2458 GGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGCGCAAGACCGATGATGGTC 2399 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||| ||| |||||||||||||| || | ||||||||| | |||||| || ||||| Sbjct 2398 TGCTGAAGAGAGGCTTCACCGTGGTGGTAGGACGTCTGCTCGGAGATGTAACCAGCCAAT 2339 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | | |||||| ||| | || || |||||| ||||||||| || ||||||||| Sbjct 2338 TCAACGACCTTCTGATCCTTGACAAGATTTCTCTTGAAACAGGCGTACATGACCTTGCGC 2279 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || |||||||| ||||| || ||| ||| || || ||| || |||| Sbjct 2278 TGACCAGGTTTCAATCCGTCGACGACGGAAGGGATGGATCGCATGTTGTC 2229 Score = 127 bits (140), Expect = 2e-24 Identities = 205/293 (70%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || || |||||| ||||| |||||||| | |||||| | ||| Sbjct 2519 AATGTAACGAGGACTGGCGGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 2460 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 ||||||| | ||| | |||||||| |||||||||||| || || | || || || Sbjct 2459 GGGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGCGCAAGACCGATGATGGT 2400 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 || || || ||||| ||||| || | ||||||||| | | ||| || |||| Sbjct 2399 CTGCTGAAGAGAGGCTTCACCGTGGTGGTAGGACGTCTGCTCGGAGATGTAACCAGCCAA 2340 Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547 | | | |||||| || |||| || || |||||| ||||| || || |||||| Sbjct 2339 TTCAACGACCTTCTGATCCTTGAC--AAGATTTCTCTTGAAACAGGCGTACATGACCTTG 2282 Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||||||| || |||| || || | ||| |||||| || ||| || |||| Sbjct 2281 CGCTGACCAGGTTTCAATCCGTCGACGACGGAAGGGATGGATCGCATGTTGTC 2229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547145990553000