Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2519 331 1e-85 seq7566 159 4e-34 seq1878 140 4e-28 seq6468 116 4e-21 seq1773 109 6e-19 >seq2519 Length=5298 Score = 331 bits (366), Expect = 1e-85 Identities = 1174/1811 (65%), Gaps = 75/1811 (4%) Strand=Plus/Minus Query 79987 GCCGCCTGATCAACGGGTACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGA 80046 ||| |||| ||||||| | | |||||| ||| || ||| | || |||||| Sbjct 3639 GCCTCCTGGTCAACGG------TGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGA 3586 Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 |||||||||||||||||||| || |||||||||| | |||||| ||| ||| Sbjct 3585 TAGTACATGCCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTG 3526 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | ||||| | || |||| || || || ||||| |||||| ||||| || ||| Sbjct 3525 CCCATAGTGGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCA 3466 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACA-- 80224 ||||| || ||||| | || | | || | |||||||| || || |||| Sbjct 3465 CGATCGGCAGCCATCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGA 3406 Query 80225 -CCTTACGAAGCTCCTCTG---GAATGTCCAGATTTTGCACACTGCCACCGTCCTTTACA 80280 |||| || |||||| | |||| || | | | | | ||||| || | Sbjct 3405 GCCTT--GA----CCTCTGTGGGGATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCG 3352 Query 80281 ATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 || | || |||| || | ||| | || | | | || || || | ||| Sbjct 3351 ATGATACGGTTCTTCATGGCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGC 3292 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 ||| | | ||||| || || ||| || ||| | || | ||||| ||| Sbjct 3291 CAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTG 3232 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 || |||||||| ||||||||| || | |||||| | ||||| || |||||||| || Sbjct 3231 TAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGC 3172 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAA---TCTGA- 80513 |||| | ||| || || || | ||||||| |||||| | ||| || | || | Sbjct 3171 GCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAG 3112 Query 80514 --CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCG 80569 ||| | || | || ||| |||| ||||||||| | ||| | |||||||| | Sbjct 3111 TCCCAGAGGTC----CGAAGGCT-TGACATTCCACATGTCATACTGAAGGATGCCCTGGG 3057 Query 80570 ACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGAC 80628 | | || || ||| || |||||| ||| ||||||||| || ||||||| |||| ||| Sbjct 3056 AGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCTGCACA-GAC 2998 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688 | ||||| ||||| || ||| ||| |||| |||||| | |||| || | Sbjct 2997 ATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCG 2938 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 || ||||| | || || | || ||| | || || || ||||| || |||| | Sbjct 2937 GGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGG 2878 Query 80749 GCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATT 80807 | || |||||||||||| |||| | | || ||||| ||| |||||| ||| Sbjct 2877 CCAATGGGGCGGTGGCGCATGTTACTGTTGC-GAGCCTCTTGAACGGGGTAATGGTTGAC 2819 Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867 ||||||| | |||||||||||| ||||||| | || || || || || ||||| || Sbjct 2818 GTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAA 2759 Query 80868 GTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921 |||| | | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 2758 GTCGTAGACACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCA 2699 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 || || ||||| |||| | | |||| | ||| || ||||||| ||||| Sbjct 2698 GACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCG 2639 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 ||| ||||| ||||| |||||||| |||| |||| || ||||||||| |||| | Sbjct 2638 AATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAA 2579 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 ||| | || |||||| ||| | || ||||| || | ||| | || | ||||| | Sbjct 2578 GGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTCAT 2519 Query 81102 CACCTTGCGGAATTTG-CCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCAC 81160 |||||| ||| || || | | ||||| | || | || |||| | | Sbjct 2518 GGTCTTGCGTCCCTTGCCCATCTG-TTCGTACTTCTCATACAAGGCCTCAAACTCCTCGC 2460 Query 81161 CGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCG 81219 ||| | || || | | | | |||||||| || |||||||| || |||||| || Sbjct 2459 CGTAGCAG-TCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTC 2401 Query 81220 TTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAG 81279 ||||| || ||||||||| || || ||||||||||| || ||||| || || Sbjct 2400 TTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACG--AG 2343 Query 81280 CGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCAT 81337 |||| ||||||| | || || || ||||| || | ||||| | || ||| || | Sbjct 2342 CGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGT 2283 Query 81338 GCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTGA 81391 |||| ||||| || || | ||| | | || | |||| |||||||||| | Sbjct 2282 GCCAAGGCTCAAGGTAGATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCAA 2226 Query 81392 CGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGT 81451 |||| || || || ||| || ||||| | |||||||| | |||| || ||| | Sbjct 2225 CGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCAT 2166 Query 81452 TCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA-----AGACCGAT 81506 | || || | || || || |||| || | ||| | |||| || ||||| Sbjct 2165 TGGTGCCGGCAATGTAGGAGCCAGTGGCACGAA---TGCGG--TGAACATTCAGGCCGAT 2111 Query 81507 GCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGAT 81566 ||||| | | ||| || ||| || || || | ||| ||||| || |||||||| Sbjct 2110 ACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGAT 2051 Query 81567 GCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCG 81624 | ||||| |||||||| | | ||| ||| || | || |||| | | | | || Sbjct 2050 GGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCT--GGGCCTGTGGGGTACCA 1993 Query 81625 GCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTT 81684 || ||||| ||||| || | ||||| |||| | | | ||||||| || |||||| Sbjct 1992 GCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTT 1933 Query 81685 TCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTAC 81744 || ||||||| || |||||||| || || | || |||||||| | ||||| Sbjct 1932 TCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGT 1873 Query 81745 TGGGGCGTCTC 81755 || ||| |||| Sbjct 1872 TGCGGCCTCTC 1862 >seq7566 Length=2327 Score = 159 bits (176), Expect = 4e-34 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || || |||||||| || |||||||| ||||| Sbjct 1234 ATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCY 1293 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 1294 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGAC 1353 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 1354 CAGCAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 1413 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 1414 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1463 >seq1878 Length=6026 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| ||||| | ||||| ||||| Sbjct 5932 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATTACGTTGGAGGTGGAGTCTTCG 5873 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || || ||||| |||||||| || ||||| |||||| Sbjct 5872 GACACGATCGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 5813 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| |||||||| ||||| | || || || ||||| || Sbjct 5812 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACACTGAGTGACTACAAC 5753 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || ||||| || ||| | ||||| || || || || Sbjct 5752 ATCCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGCCA 5703 >seq6468 Length=11497 Score = 116 bits (128), Expect = 4e-21 Identities = 199/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| ||||| || ||| | ||||| | || ||| ||||||||||| || || Sbjct 2234 CATGCGATCCATCCCTTCCGTCGTCGACGGATTGAAACCTGGTCAGCGCAAGGTCATGTA 2293 Query 32019 CGCCTGCCTCAAGAAGAACCT-GTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACG 32077 |||||| |||||| || || ||| || || |||||| | | || | || ||| Sbjct 2294 CGCCTGTTTCAAGAGAAATCTTGTCAAGGATCA-GAAGGTCGTTGAATTGGCTGGTTACA 2352 Query 32078 TGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACC 32137 | | ||||| ||| |||| |||||||| || || || || ||| ||||| || | Sbjct 2353 TCTCCGAGCAGACGTCCTACCACCACGGTGAAGCCTCTCTTCAGCAGACCATCATCGGTC 2412 Query 32138 TTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTG 32197 |||| ||||||||||| || | || ||| | |||| || ||||| || ||| | || | Sbjct 2413 TTGCGCAGAACTTTGTGGGCTCCAACAACATCAACTGCCTGGAGCCCTCCGGAAACTTCG 2472 Query 32198 GGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 | | || || |||||||| |||||| || || | |||||||| Sbjct 2473 GTTCTCGTCTTGCCGGTGGTTCGGATGCCGCCAGTCCTCGTTACAT 2518 >seq1773 Length=6176 Score = 109 bits (120), Expect = 6e-19 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 5161 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATC 5220 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| | Sbjct 5221 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTG 5280 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||| | || ||||| | ||||| || | || ||| Sbjct 5281 ATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAG 5340 Query 27595 G 27595 | Sbjct 5341 G 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570237435913200