Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 331 1e-85
seq7566 159 4e-34
seq1878 140 4e-28
seq6468 116 4e-21
seq1773 109 6e-19
>seq2519
Length=5298
Score = 331 bits (366), Expect = 1e-85
Identities = 1174/1811 (65%), Gaps = 75/1811 (4%)
Strand=Plus/Minus
Query 79987 GCCGCCTGATCAACGGGTACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGA 80046
||| |||| ||||||| | | |||||| ||| || ||| | || ||||||
Sbjct 3639 GCCTCCTGGTCAACGG------TGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGA 3586
Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106
|||||||||||||||||||| || |||||||||| | |||||| ||| |||
Sbjct 3585 TAGTACATGCCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTG 3526
Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166
| | ||||| | || |||| || || || ||||| |||||| ||||| || |||
Sbjct 3525 CCCATAGTGGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCA 3466
Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACA-- 80224
||||| || ||||| | || | | || | |||||||| || || ||||
Sbjct 3465 CGATCGGCAGCCATCTGAACGACAGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGA 3406
Query 80225 -CCTTACGAAGCTCCTCTG---GAATGTCCAGATTTTGCACACTGCCACCGTCCTTTACA 80280
|||| || |||||| | |||| || | | | | | ||||| || |
Sbjct 3405 GCCTT--GA----CCTCTGTGGGGATGTTGGGAATGTTCTGAATTGAACCGTTCTCGGCG 3352
Query 80281 ATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337
|| | || |||| || | ||| | || | | | || || || | |||
Sbjct 3351 ATGATACGGTTCTTCATGGCATCGGACCATAGGCCCATGTCGACAAGGTCCTTAAGAAGC 3292
Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397
||| | | ||||| || || ||| || ||| | || | ||||| |||
Sbjct 3291 CAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTG 3232
Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457
|| |||||||| ||||||||| || | |||||| | ||||| || |||||||| ||
Sbjct 3231 TAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGC 3172
Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAA---TCTGA- 80513
|||| | ||| || || || | ||||||| |||||| | ||| || | || |
Sbjct 3171 GCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAG 3112
Query 80514 --CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCG 80569
||| | || | || ||| |||| ||||||||| | ||| | |||||||| |
Sbjct 3111 TCCCAGAGGTC----CGAAGGCT-TGACATTCCACATGTCATACTGAAGGATGCCCTGGG 3057
Query 80570 ACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGAC 80628
| | || || ||| || |||||| ||| ||||||||| || ||||||| |||| |||
Sbjct 3056 AGACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCTGCACA-GAC 2998
Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688
| ||||| ||||| || ||| ||| |||| |||||| | |||| || |
Sbjct 2997 ATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCG 2938
Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748
|| ||||| | || || | || ||| | || || || ||||| || |||| |
Sbjct 2937 GGAGACTCGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGG 2878
Query 80749 GCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATT 80807
| || |||||||||||| |||| | | || ||||| ||| |||||| |||
Sbjct 2877 CCAATGGGGCGGTGGCGCATGTTACTGTTGC-GAGCCTCTTGAACGGGGTAATGGTTGAC 2819
Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867
||||||| | |||||||||||| ||||||| | || || || || || ||||| ||
Sbjct 2818 GTCGATGATTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAA 2759
Query 80868 GTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921
|||| | | ||| | ||||| | ||||| || || ||||| |||||
Sbjct 2758 GTCGTAGACACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCA 2699
Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981
|| || ||||| |||| | | |||| | ||| || ||||||| |||||
Sbjct 2698 GACAGCGACCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCG 2639
Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041
||| ||||| ||||| |||||||| |||| |||| || ||||||||| |||| |
Sbjct 2638 AATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAA 2579
Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101
||| | || |||||| ||| | || ||||| || | ||| | || | ||||| |
Sbjct 2578 GGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGCTTCTGAGCCTTCAT 2519
Query 81102 CACCTTGCGGAATTTG-CCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCAC 81160
|||||| ||| || || | | ||||| | || | || |||| | |
Sbjct 2518 GGTCTTGCGTCCCTTGCCCATCTG-TTCGTACTTCTCATACAAGGCCTCAAACTCCTCGC 2460
Query 81161 CGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCG 81219
||| | || || | | | | |||||||| || |||||||| || |||||| ||
Sbjct 2459 CGTAGCAG-TCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTC 2401
Query 81220 TTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAG 81279
||||| || ||||||||| || || ||||||||||| || ||||| || ||
Sbjct 2400 TTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACG--AG 2343
Query 81280 CGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCAT 81337
|||| ||||||| | || || || ||||| || | ||||| | || ||| || |
Sbjct 2342 CGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTCGAAGACGTCGGCGT 2283
Query 81338 GCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTGA 81391
|||| ||||| || || | ||| | | || | |||| |||||||||| |
Sbjct 2282 GCCAAGGCTCAAGGTAGATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCAA 2226
Query 81392 CGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGT 81451
|||| || || || ||| || ||||| | |||||||| | |||| || ||| |
Sbjct 2225 CGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCAT 2166
Query 81452 TCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA-----AGACCGAT 81506
| || || | || || || |||| || | ||| | |||| || |||||
Sbjct 2165 TGGTGCCGGCAATGTAGGAGCCAGTGGCACGAA---TGCGG--TGAACATTCAGGCCGAT 2111
Query 81507 GCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGAT 81566
||||| | | ||| || ||| || || || | ||| ||||| || ||||||||
Sbjct 2110 ACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCGAT 2051
Query 81567 GCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCG 81624
| ||||| |||||||| | | ||| ||| || | || |||| | | | | ||
Sbjct 2050 GGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCT--GGGCCTGTGGGGTACCA 1993
Query 81625 GCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTT 81684
|| ||||| ||||| || | ||||| |||| | | | ||||||| || ||||||
Sbjct 1992 GCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTT 1933
Query 81685 TCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTAC 81744
|| ||||||| || |||||||| || || | || |||||||| | |||||
Sbjct 1932 TCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGT 1873
Query 81745 TGGGGCGTCTC 81755
|| ||| ||||
Sbjct 1872 TGCGGCCTCTC 1862
>seq7566
Length=2327
Score = 159 bits (176), Expect = 4e-34
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| || ||||| || || || |||||||| || |||||||| |||||
Sbjct 1234 ATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCY 1293
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 1294 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGAC 1353
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| | || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 1354 CAGCAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 1413
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || ||| |||| || || |||||
Sbjct 1414 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1463
>seq1878
Length=6026
Score = 140 bits (154), Expect = 4e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| ||||| ||||| | ||||| |||||
Sbjct 5932 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATTACGTTGGAGGTGGAGTCTTCG 5873
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| | || || ||||| |||||||| || ||||| ||||||
Sbjct 5872 GACACGATCGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 5813
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || ||||| |||||||| ||||| | || || || ||||| ||
Sbjct 5812 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACACTGAGTGACTACAAC 5753
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || || ||||| || ||| | ||||| || || || ||
Sbjct 5752 ATCCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGCCA 5703
>seq6468
Length=11497
Score = 116 bits (128), Expect = 4e-21
Identities = 199/286 (70%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018
|| ||| ||||| || ||| | ||||| | || ||| ||||||||||| || ||
Sbjct 2234 CATGCGATCCATCCCTTCCGTCGTCGACGGATTGAAACCTGGTCAGCGCAAGGTCATGTA 2293
Query 32019 CGCCTGCCTCAAGAAGAACCT-GTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACG 32077
|||||| |||||| || || ||| || || |||||| | | || | || |||
Sbjct 2294 CGCCTGTTTCAAGAGAAATCTTGTCAAGGATCA-GAAGGTCGTTGAATTGGCTGGTTACA 2352
Query 32078 TGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACC 32137
| | ||||| ||| |||| |||||||| || || || || ||| ||||| || |
Sbjct 2353 TCTCCGAGCAGACGTCCTACCACCACGGTGAAGCCTCTCTTCAGCAGACCATCATCGGTC 2412
Query 32138 TTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTG 32197
|||| ||||||||||| || | || ||| | |||| || ||||| || ||| | || |
Sbjct 2413 TTGCGCAGAACTTTGTGGGCTCCAACAACATCAACTGCCTGGAGCCCTCCGGAAACTTCG 2472
Query 32198 GGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243
| | || || |||||||| |||||| || || | ||||||||
Sbjct 2473 GTTCTCGTCTTGCCGGTGGTTCGGATGCCGCCAGTCCTCGTTACAT 2518
>seq1773
Length=6176
Score = 109 bits (120), Expect = 6e-19
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 5161 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATC 5220
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| |
Sbjct 5221 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTG 5280
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || || || ||||| |||||||| | || ||||| | ||||| || | || |||
Sbjct 5281 ATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAG 5340
Query 27595 G 27595
|
Sbjct 5341 G 5341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570237435913200
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