Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3288 123 2e-23 >seq3288 Length=4615 Score = 123 bits (136), Expect = 2e-23 Identities = 419/654 (64%), Gaps = 49/654 (7%) Strand=Plus/Minus Query 29849 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCG 29908 ||||| || | ||| ||||| ||| || | || |||| || ||||||||| ||| Sbjct 1207 CTGGGTTCGCGCTCCAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCG 1148 Query 29909 TCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29967 || |||| | ||| | || || || || | || || || | || ||||||| Sbjct 1147 TCGCCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCGCACGCGCGCGCAATCATGTG 1089 Query 29968 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 30027 ||| || | || ||||||||||||||| ||||| || ||||| ||||| || | |||| Sbjct 1088 CGTTAGCAAAGCGTAGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCG 1029 Query 30028 CTGGTAGAGCTGACACGAGAG---------------CTCT-------------------- 30052 |||||| ||||| || || |||| Sbjct 1028 CTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGC 969 Query 30053 CCGTCGCTC----ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 |||| | | ||||| ||||| | ||||| ||||| || || || ||||| Sbjct 968 CCGTGGGTACGAAACGTAGAACTGCGCAAACATG---TGGCATGGGGGGAGGGCCATCTT 912 Query 30106 GCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 30165 || ||| ||||||||| |||| || || |||||| | ||| | ||||| || | Sbjct 911 CTTCAGGTCGGCGGGGTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTT 852 Query 30166 GATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCA 30224 || || | | | || || ||||| || || ||| |||| ||| || | | | Sbjct 851 GAGCTTGTGGATGAC-TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGG 793 Query 30225 TGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30284 || |||||| || |||||||||||||| ||||| |||||||| || || ||||| | Sbjct 792 AATCGACGTACTCGGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGC 733 Query 30285 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30344 | || | |||| || ||| |||| | || || | || |||||| |||||| Sbjct 732 CGATCTCGCGGTGCGTGAGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCC 673 Query 30345 AGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30404 ||||||| || ||| ||| || | ||| |||| ||| || |||||||| Sbjct 672 AGATCTTGACGCCCGCCTCGCTCAGGGCGAGAGAGGATGTGTTGCCTTCGATGAACCACA 613 Query 30405 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 ||||||| | | |||||| ||||| | ||| || ||||||||||||| Sbjct 612 GCAGCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGGAA 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406259717221620