Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1773 91.5 1e-13 seq1878 87.8 2e-12 >seq1773 Length=6176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || ||||| || ||| | ||||| ||||| || || | || ||| | || Sbjct 5161 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATC 5220 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || || ||||| || || || || ||||| || ||||| || Sbjct 5221 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTG 5280 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | |||||||| || | || ||| | ||| ||||||| ||||||||||| ||| Sbjct 5281 ATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAG 5340 Query 27177 G 27177 | Sbjct 5341 G 5341 >seq1878 Length=6026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | ||||| | || ||||| | || Sbjct 5932 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATTACGTTGGAGGTGGAGTCTTCG 5873 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || || || || || || || ||||| || Sbjct 5872 GACACGATCGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 5813 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| ||| | || ||| | || | || |||||| Sbjct 5812 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACACTGAGTGACTACAAC 5753 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||||||||| | || | || | ||| |||| || ||| Sbjct 5752 ATCCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGC 5705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434862757627200