Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1773 91.5 1e-13
seq1878 87.8 2e-12
>seq1773
Length=6176
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| || || || ||||| || ||| | ||||| ||||| || || | || ||| | ||
Sbjct 5161 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATC 5220
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | ||||| || || || ||||| || || || || ||||| || ||||| ||
Sbjct 5221 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTG 5280
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176
|| | |||||||| || | || ||| | ||| ||||||| ||||||||||| |||
Sbjct 5281 ATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAG 5340
Query 27177 G 27177
|
Sbjct 5341 G 5341
>seq1878
Length=6026
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||||| ||| | ||||| | || ||||| | ||
Sbjct 5932 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATTACGTTGGAGGTGGAGTCTTCG 5873
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || || || || || || || || || ||||| ||
Sbjct 5872 GACACGATCGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 5813
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| ||||| ||| | || ||| | || | || ||||||
Sbjct 5812 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACACTGAGTGACTACAAC 5753
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || ||||||||||| | || | || | ||| |||| || |||
Sbjct 5752 ATCCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGC 5705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434862757627200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |