Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 95.1 1e-14
>seq3288
Length=4615
Score = 95.1 bits (104), Expect = 1e-14
Identities = 208/301 (69%), Gaps = 8/301 (3%)
Strand=Plus/Plus
Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCC 34379
||| || ||||||||||||| |||| || || || || || |||| ||| || ||
Sbjct 659 GGGCGTCAAGATCTGGGACGGCAACGGCTCGCGGGAGTTCCTAGACA-GCGTCGGCCTCA 717
Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
| || ||| |||||| | ||||| || ||||| ||||| ||||| || || || |
Sbjct 718 CGCACCGCGAGATCGGCGACCTCGGCCCCGTGTACGGCTTCCAATGGAGGCATTTCGGCG 777
Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497
| ||||| || | | ||| |||| || |||| ||||| | |||||||| || | |
Sbjct 778 CCGAGTA-CGTCGATTCCAAGACGGATTACACGGGCCAGGGTGTCGACCAGCTCGCCGAA 836
Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557
|| ||| ||| | ||| ||||| ||||| | | ||| | || ||||||||||
Sbjct 837 -GTCATCCACAAGCTCAAGACAAACCCCTATGACCGCCGCATCCTCCTGAGCGCGTGGAA 895
Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACG 34616
||| || || |||||| |||||||| ||||||| | ||| || |||||||
Sbjct 896 CCCCGCCGACCTGAAGAAGATGGCCCTCCCCCCATGCCACA-TGTTTGCGCAGTTCTACG 954
Query 34617 T 34617
|
Sbjct 955 T 955
Score = 95.1 bits (104), Expect = 1e-14
Identities = 208/301 (69%), Gaps = 8/301 (3%)
Strand=Plus/Minus
Query 6728 ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786
|||||||| || ||| | ||||||| |||||||| |||||| || || ||
Sbjct 955 ACGTAGAACTGCGCAAACA-TGTGGCATGGGGGGAGGGCCATCTTCTTCAGGTCGGCGGG 897
Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846
||||||||||| || | ||| | | ||||| ||||| ||| | ||| ||| ||
Sbjct 896 GTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAGCTTGTGGATGAC 837
Query 6847 GTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904
| | || |||||||| | ||||| |||| || |||| ||| | | || |||||
Sbjct 836 -TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGGAATCGACG-TACTCG 779
Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964
|| || || || ||||| ||||| ||||| || ||||| | |||||| ||| ||
Sbjct 778 GCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCTCGCGGTGC 719
Query 6965 GGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
| || || ||| |||| || || || || || |||| ||||||||||||| || ||
Sbjct 718 GTGAGGCCGACGC-TGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 660
Query 7024 C 7024
|
Sbjct 659 C 659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448205050429200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |