Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3288 95.1 1e-14 >seq3288 Length=4615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 208/301 (69%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCC 34379 ||| || ||||||||||||| |||| || || || || || |||| ||| || || Sbjct 659 GGGCGTCAAGATCTGGGACGGCAACGGCTCGCGGGAGTTCCTAGACA-GCGTCGGCCTCA 717 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | || ||| |||||| | ||||| || ||||| ||||| ||||| || || || | Sbjct 718 CGCACCGCGAGATCGGCGACCTCGGCCCCGTGTACGGCTTCCAATGGAGGCATTTCGGCG 777 Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497 | ||||| || | | ||| |||| || |||| ||||| | |||||||| || | | Sbjct 778 CCGAGTA-CGTCGATTCCAAGACGGATTACACGGGCCAGGGTGTCGACCAGCTCGCCGAA 836 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || ||| ||| | ||| ||||| ||||| | | ||| | || |||||||||| Sbjct 837 -GTCATCCACAAGCTCAAGACAAACCCCTATGACCGCCGCATCCTCCTGAGCGCGTGGAA 895 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACG 34616 ||| || || |||||| |||||||| ||||||| | ||| || ||||||| Sbjct 896 CCCCGCCGACCTGAAGAAGATGGCCCTCCCCCCATGCCACA-TGTTTGCGCAGTTCTACG 954 Query 34617 T 34617 | Sbjct 955 T 955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 208/301 (69%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 6728 ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 |||||||| || ||| | ||||||| |||||||| |||||| || || || Sbjct 955 ACGTAGAACTGCGCAAACA-TGTGGCATGGGGGGAGGGCCATCTTCTTCAGGTCGGCGGG 897 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||||||||| || | ||| | | ||||| ||||| ||| | ||| ||| || Sbjct 896 GTTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAGCTTGTGGATGAC 837 Query 6847 GTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904 | | || |||||||| | ||||| |||| || |||| ||| | | || ||||| Sbjct 836 -TTCGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGGAATCGACG-TACTCG 779 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || || || || ||||| ||||| ||||| || ||||| | |||||| ||| || Sbjct 778 GCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCTCGCGGTGC 719 Query 6965 GGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | || || ||| |||| || || || || || |||| ||||||||||||| || || Sbjct 718 GTGAGGCCGACGC-TGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 660 Query 7024 C 7024 | Sbjct 659 C 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448205050429200