Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7566 98.7 7e-16 >seq7566 Length=2327 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 1237 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCC 1296 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | || || || || Sbjct 1297 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCA 1355 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || ||||| || || || |||| ||||| | ||| ||||| Sbjct 1356 GCAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 1415 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1416 CATCCAGAAGGAGTCCAC 1433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337967436999380